Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu2g1377 ATGGCTGACTGTGGTGAACACATTGATCGAATCAGTGACTTGCCAAGGAATGTGATTGATAGCATCCTACAATACTTGCCCATCCAAGACCTAGTTAAGACCAGTATATTGTCAAGGAAATGGAGGTATATGTGGGCTTCAGTCCCACAGCTTCAGTTTGAAAATAACTTCTTTGAGAATTGTAAGCGTCTTGAAAACCTTGAAGCTTCTAGTATTATTACGGAAGTTCTTTTGCTCCACAATGGCCCAGTACATAAGTTTACTCTTCACATTCCTTCAAACTacccaatcaaaattgaatGCCTCAGTAAGTGGATTCTGTTTTTGTCAAGGAAAGGGATTAAAGATCTTGAGCTTGTAAACCTACAAACAGATCGCTATCAAACCCCATCTCATATCTTCTCTTTTCAGGCGTTGACTTACCTTCAGCTTGATAGATTTAAGCTATTGACACCGCCTGATTTTTGTGGATTTAAAAGTCTGTTTGACCTTCGcttatttcacattaaatttgaGTCCGGTGCACTTGAGAGTCTTTTGTCTGGTTGTCCCTTACTTGTGCAACTCACCATTTCTTACTGTAATGGTTTTGACTGTGTTACTGTCTCTGCTCCTACTCTCAAAGTCTTATACATAAAAGGTCCTAAGGTCATCAAGTCAATTTGTTTGAAACAAGCACAGAATCTGATTGATCTTACACTCTGGGCTGATAGATGTAAGGATAATGTTGAGGGAGGCTGGGTATCTGATTTGATGAAAGGCTTGCTGAAAATTGAGAGGCTATGTCTGGGAAGAGGTTACACAAAGATTTTGTCTGCCATCAATCCACAAGTGCTGCTTAGGTCAGTCGACACTTTAAAATATCTGGAATTGAGTGGTGTGAATTTCAATGAAGAAGGAGAGCTTCTGTTTACTATTTCTTTACTTGAAAGTTCTCCTAACCTGGAGAAACTTGTTATAAAGAGTAATAGCATGGCTGTGGAGTCACAACAGATTTCGAAGGAATTTGATTGCATTAACTGTTACTTTAATCAGCTTCAAACTGTAAAAATCACAGTTAAAACTTCCTATAAGCCTGCACTTGACTTGATACGGTTTGTGCTTGCAAGTTCCCCGGCGTTGAAGATCCTTACTTTCAAGGTTGGTCTTGGTCTAAATCAATCAGATGCACCTATATTGTTAAGTATTTCACGTGATTTGTTGAAGATGGAACGAGCATCACCAAGAGCACAAGTTAAATTCCTTTATGATGGCCTTATCAAATAG 1266 0.3807 MADCGEHIDRISDLPRNVIDSILQYLPIQDLVKTSILSRKWRYMWASVPQLQFENNFFENCKRLENLEASSIITEVLLLHNGPVHKFTLHIPSNYPIKIECLSKWILFLSRKGIKDLELVNLQTDRYQTPSHIFSFQALTYLQLDRFKLLTPPDFCGFKSLFDLRLFHIKFESGALESLLSGCPLLVQLTISYCNGFDCVTVSAPTLKVLYIKGPKVIKSICLKQAQNLIDLTLWADRCKDNVEGGWVSDLMKGLLKIERLCLGRGYTKILSAINPQVLLRSVDTLKYLELSGVNFNEEGELLFTISLLESSPNLEKLVIKSNSMAVESQQISKEFDCINCYFNQLQTVKITVKTSYKPALDLIRFVLASSPALKILTFKVGLGLNQSDAPILLSISRDLLKMERASPRAQVKFLYDGLIK 421
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu2g1377 421 ProSiteProfiles F-box domain profile. 8 61 IPR001810 GO:0005515
Ssu2g1377 421 SMART fbox_2 14 53 IPR001810 GO:0005515
Ssu2g1377 421 SUPERFAMILY RNI-like 106 324 - -
Ssu2g1377 421 Gene3D Ribonuclease Inhibitor 108 378 IPR032675 -
Ssu2g1377 421 SUPERFAMILY F-box domain 7 66 IPR036047 GO:0005515
Ssu2g1377 421 Pfam F-box domain 11 47 IPR001810 GO:0005515
Ssu2g1377 421 PANTHER CYCLIN-LIKE F-BOX 5 390 - -
Ssu2g1377 421 SMART 9598neu4hmm 340 415 IPR006566 -
Ssu2g1377 421 Gene3D - 4 51 - -
Ssu2g1377 421 PANTHER F-BOX/RNI/FBD-LIKE DOMAIN PROTEIN 5 390 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu2g1377 Ssu-Chr2 57805070 57806897 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu2g1377 9 210 EF-hand Containing Proteins AT5G41840 28.821 1.96e-14 73.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu2g1377 - - ccaj:109791275 493.041
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu2g1377 2 57805070 57806897 Ssu2g1377 2 57805070 57806897 ECH