Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu2g1376 ATGGGTGATGTGATGGGTCCTGACCTGATCAGTGACCTTCCTCAAAGCATTATAGAGAGCATTCTGGTACAGCTTCCAATTAGGGATGCTGTGAGAACTAGTATTTTGTCTAGTAAATGGAGGTACAAGTGGTCTTCAATTACTCAACTTGTGTTTGATGACAAATGTGTGCCCTTTAGTAATGATAGGGAGGTTGTTGAGAAGAGTGTTGTCAAGTTCATCACCAGGGTGTTGTTTCTTCACCAAGGACCAATTCATAAGTTCCAAATTGCAAATTCGAAGTTGCAGAGCTGCCCCGAGATCGATCAGTGGATTCTTTTCCTCTCGAGGAATGGCATCAAGGAGTTGGTTATGGAGTTGGGAGAGGGGGAGTTTTTCAGAATACCTTCAAGCCTTTTCAATTGTGGGAAGTTGACTCGGTTGGAGCTCTCACGGTGCGAGTTGGATCTGCCGCATAGTTTTAAGGGGTTCATGTGCTTGAGGAGCCTCAACCTTCATCAAGTTTTGATATCTCCTGATGCAGTTGAGGGCCTTATTTTGAGATGCCCTCTCTTGGAGAGTTTGTCCCTGTCGTACTTTGATAATTTGGCTCTTACTATCTGTGCCCCGAATCTTAAGTGCTTGTATCTTGAAGGTGAATTCAAGGATATATGTCTTGAAGATACCCCACTTTTGGTTGAAATATCCATTGCTATGTATATGACTGATGACATTGCTGAGCACTTTGAGCAAAGCTCAAATTGCAATTTTGTCAAGTTTCTTGGTGGTGTGCCTAATCTTGAGAGGCTTGTTGGGCTTATCTACTTCACAAAGTATTTGAGCATAGGGATCGACTCAGTGCATCTTCCAATAATGTACAACAATTTGGAGACTATTGAATTACATCAAGTAAATTTTGAGGATACGAAAGAGATACTTGTCATCCTTCACTTGATTACCAGCTCTCCCAATCTAAAAGAACTACAAATTTCAGGTTCATCAAACATACCAGTTGCTGTAGATACCCCAGACTTGGATTTTTGGGAAAAAGAATGCCTTTCAGATTCTACACTCAACAAGCTTAAAATTGTGAAGTTATCAGAAATGGGTGGTTGGCCACATGAGATAGAATTTACCAAATATTTGCTTGGCCGTTCTCCTGTGCTTGAGACATTGAGTATCATTCCTTGTGTATTTGATATGgagaataatttgaaaatgttgatCGAATTGGTGAAATGTAGAAGAGCTTCTACTAGAGCAGAAGTTATTTTCATCCACGACTGA 1266 0.4028 MGDVMGPDLISDLPQSIIESILVQLPIRDAVRTSILSSKWRYKWSSITQLVFDDKCVPFSNDREVVEKSVVKFITRVLFLHQGPIHKFQIANSKLQSCPEIDQWILFLSRNGIKELVMELGEGEFFRIPSSLFNCGKLTRLELSRCELDLPHSFKGFMCLRSLNLHQVLISPDAVEGLILRCPLLESLSLSYFDNLALTICAPNLKCLYLEGEFKDICLEDTPLLVEISIAMYMTDDIAEHFEQSSNCNFVKFLGGVPNLERLVGLIYFTKYLSIGIDSVHLPIMYNNLETIELHQVNFEDTKEILVILHLITSSPNLKELQISGSSNIPVAVDTPDLDFWEKECLSDSTLNKLKIVKLSEMGGWPHEIEFTKYLLGRSPVLETLSIIPCVFDMENNLKMLIELVKCRRASTRAEVIFIHD 421
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu2g1376 421 Pfam FBD 351 387 IPR006566 -
Ssu2g1376 421 SUPERFAMILY F-box domain 5 82 IPR036047 GO:0005515
Ssu2g1376 421 SUPERFAMILY RNI-like 105 394 - -
Ssu2g1376 421 SMART 9598neu4hmm 344 419 IPR006566 -
Ssu2g1376 421 Gene3D Ribonuclease Inhibitor 89 407 IPR032675 -
Ssu2g1376 421 ProSiteProfiles F-box domain profile. 7 41 IPR001810 GO:0005515
Ssu2g1376 421 PANTHER F-BOX PROTEIN-LIKE 8 397 - -
Ssu2g1376 421 PANTHER - 8 397 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu2g1376 Ssu-Chr2 57799738 57801270 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu2g1376 8 214 EF-hand Containing Proteins AT5G41840 23.013 2.68e-07 50.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu2g1376 - - gmx:100781833 789.645
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu2g1376 2 57799738 57801270 Ssu2g1376 2 57799738 57801270 ECH