Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu2g1033 ATGTCCATCCTCACATGTTCAGGAAGTGCATCACTCAATGCAGAAGTAGCAGCTATGCCGAAGCAGTGTGACTTGCAAATCCACATTAATGAAGAGGAAATATTCCTTTTGGACAAGAAGTTCATATCAAAATACTGTGGAAGAATGAAGAAAATCTTGAATCACGAAAAGGGAGGGTGCAATAGCAAGACCCTGAGCATTGAAATCAATGATTTCCCTGGAGGGCCAGATGGGTTTGAGCTAGTTTCAAGATTCTGTTACAACCATGGCAAAATCCTTATTACTGTGTCCAATGTGCTTATCCTCCATTGTTGTGCCCTTTATCTTGGAATGACTGAGGAGGTCTTCAGCAACAATCTCTTACAACAAACAGAAACCTTTCTTGAAGGAATCCATTACTGGACATGGAATGAAATACTTGTAAGTCTCAAGAATTGTGAGCTATTTTATACATATGCAGATAGCTATGGTCTATTAGAGAAGATTATTGGTGCACTCATAGCAAAAATGGATCAAAATTCCGAAGTAAACCTCTTCACCTCCTCATTTTCATCATCCCCATCATCTCCTGAGTGCAATTCTGCCAAAAGATTTACTTATTCAACACAGCTTACTCCCAAGACAGTAAAGTCAACTTTGCCAAGCAAAGCATGGTGGTTTGAGGATTTGGCTACTTTACCCCCGAAGATCATTGAGAAGTTTCTCCAGTCTATTGGAGCTTACAAAACAGATAACAACAACTCAATTCTCACGAGATTTCTGCTTCATTATCTGAAAGTAGTGATTCCAGCAAGAGAGGTTAATTGCAAAAACAGTGTTGAGTATGCTGGTCTTGCAGAAACAGCTGTTTATGGAGTCATATTTGTTGGTAACAAGAGATTTTCTTGTAGAGGCCTTTTTTGGGTATTAAGGATTGTGTCAAGGTTTGGGATGAGTAGAGATTGCAGAATTGAAATTGAGAAATTGATTGGTGGGGTGCTTGAGCAAGCAACTTTGGATGATCTACTAGTCTCTGGGCATCATGTGGGACTTTATTATGATGTAACCTTTGTGATAAGATTGATAAAACAATTTGTTGATATAAATAGCTCTGATGGGGTGTGTGTACAGAAGTTGAAAAAAGTTGGTAGATTAGTTGACATGTATTTGATAGAGATATCCCCTGATCAGAACCTCAAGGTCACTAAATTTCTTGCAGTTGCAGAATGTTTGCCTGATTGTGCCAGGGATTGCTTTGATGGGGTGTACATAGCCATTGACATCTATCTTCAGTCTCATCCAATGCTCGCAATTGAGGAGAGGTCAAGATTGTGTAGATGTCTTAATTACAATAAACTCAGCTTTGAAGCTTGTAAAGATCTTGCAAAGAACCCCAGAATATCTCCAACGATTGCAATGCAGGCTCTTATTTCTCAACAAACCAAAATTCCATCAAGTGACTCAGCAATTGACGAAAGTGGAATCATGAACCTGTCCCAAATCATTTTGTACTGTGACAAGACAGATAGCTCCTTGGAAGGGAAAGAATATAAGAGACTAAACCTTGAGAGAATGGAATGGAGAGTAAGAGAATTGGAGAAATTGTGCAAGGAAATGAAGGTCCAGATGTCAAGGTTTCACTAG 1623 0.3913 MSILTCSGSASLNAEVAAMPKQCDLQIHINEEEIFLLDKKFISKYCGRMKKILNHEKGGCNSKTLSIEINDFPGGPDGFELVSRFCYNHGKILITVSNVLILHCCALYLGMTEEVFSNNLLQQTETFLEGIHYWTWNEILVSLKNCELFYTYADSYGLLEKIIGALIAKMDQNSEVNLFTSSFSSSPSSPECNSAKRFTYSTQLTPKTVKSTLPSKAWWFEDLATLPPKIIEKFLQSIGAYKTDNNNSILTRFLLHYLKVVIPAREVNCKNSVEYAGLAETAVYGVIFVGNKRFSCRGLFWVLRIVSRFGMSRDCRIEIEKLIGGVLEQATLDDLLVSGHHVGLYYDVTFVIRLIKQFVDINSSDGVCVQKLKKVGRLVDMYLIEISPDQNLKVTKFLAVAECLPDCARDCFDGVYIAIDIYLQSHPMLAIEERSRLCRCLNYNKLSFEACKDLAKNPRISPTIAMQALISQQTKIPSSDSAIDESGIMNLSQIILYCDKTDSSLEGKEYKRLNLERMEWRVRELEKLCKEMKVQMSRFH 540
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu2g1033 540 PANTHER PHOTOTROPIC-RESPONSIVE NPH3 FAMILY PROTEIN 20 532 - -
Ssu2g1033 540 SUPERFAMILY POZ domain 20 113 IPR011333 -
Ssu2g1033 540 Coils Coil 515 535 - -
Ssu2g1033 540 PANTHER OS12G0117600 PROTEIN 20 532 IPR043454 -
Ssu2g1033 540 Pfam NPH3 family 218 451 IPR027356 -
Ssu2g1033 540 ProSiteProfiles NPH3 domain profile. 217 475 IPR027356 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu2g1033 Ssu-Chr2 48537827 48541603 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu2g1033 24 538 EF-hand Containing Proteins AT3G44820 23.909 3.87e-49 178
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu2g1033 - - gmx:100785736 894.034
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu2g1033 2 48537827 48541603 Ssu2g1033 2 48537827 48541603 ECH