Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu2g1014 ATGGAAAGGGAAAAGTGGAGAGACCATAGCAATAGCAATGGGTATTACGATAGGTTTGTGTGTGATTATGACGGAGAGGTACCCAGCAGAGAACGAAGCCCTACGAAACCTTCTTCGGTGTCTTCGTCGCCTCCGAGACTCAGCTACATCGAACACCATGTTTCCAAATTCGATACCTTGGCTGGTGTCGCTATCAAGTATGGTGTTGAGGTTGTGGATATAAAAAAGATGAATGGCCTTGTTACAGACCATCAAATGTTTGCGCTTACAACTCTCCAAATTCCGCTTCCTGGAAGGCACCCTCCATCTCCTTGTTTATCAAATGGTTCCAGTACTCCAGGACATGGTAACTCAGATCACAGTCCACCTAATCAGTCATACTGTGATCTGCTTGAATCATTCCAATCCCTGAGAATAAAGTCATCAGAGCGGAAGGTCTCCCCAGCCATGAGCTCATTACAGGGTTACTATGGACTTAAAGGGACCTCAAGTCCCTCAGAAGATTGTGCATTCCCCAGAAACTTACCTATGTCTGTTCGACCTCTGAGTCGTCACCGGAAATCCAAAAGTTTGGTCAATGTAATTTTGGAAGAGATTATGGAAAAATCTGAAGATGCACCGGCTGCAGAAAGCAGGGAAGTTGACTCCGATAAATGGAACAATAAACTTGTCCAGAGACGTCAAAAATCTGTAGCTGACTTTACGAGGATACCAGAGTTGCTTTTGAGGGAGGATAATAGCAGCAGTGGTGGTCTTCCATCAAGAACAGGAAAGGGCTTAGCTCTGAGACCGAAAGCAGCTAACCGAACTGCAGTGACAACTGATTCTGAACCAATTGGTTTGAATCCTGTGCCAATGGGTATGGGAGATACTTCTCTAGATGATGGTTCATCTGCTGGGGTGAGGAAATCATCAAGTACTTCTTGTTTACAGGATCAAGATAACAGTGGCTCCTCATCCATTTGGCCAACCTCAATGTGGAATTTGAAACCAGACTTACAGGCCCTTTCAACTGCAGCCATTGGAAAACCAATCTTTGATGGCTTGCCCAAGCCAATAACTGGTCGAAGAAATAAAGCTGCACTTGATTAA 1092 0.4478 MEREKWRDHSNSNGYYDRFVCDYDGEVPSRERSPTKPSSVSSSPPRLSYIEHHVSKFDTLAGVAIKYGVEVVDIKKMNGLVTDHQMFALTTLQIPLPGRHPPSPCLSNGSSTPGHGNSDHSPPNQSYCDLLESFQSLRIKSSERKVSPAMSSLQGYYGLKGTSSPSEDCAFPRNLPMSVRPLSRHRKSKSLVNVILEEIMEKSEDAPAAESREVDSDKWNNKLVQRRQKSVADFTRIPELLLREDNSSSGGLPSRTGKGLALRPKAANRTAVTTDSEPIGLNPVPMGMGDTSLDDGSSAGVRKSSSTSCLQDQDNSGSSSIWPTSMWNLKPDLQALSTAAIGKPIFDGLPKPITGRRNKAALD 363
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu2g1014 363 PANTHER PEPTIDOGLYCAN-BINDING LYSM DOMAIN-CONTAINING PROTEIN 35 363 - -
Ssu2g1014 363 SMART LysM_2 51 95 IPR018392 -
Ssu2g1014 363 PANTHER LOC443603 PROTEIN-RELATED 35 363 IPR045030 -
Ssu2g1014 363 MobiDBLite consensus disorder prediction 100 126 - -
Ssu2g1014 363 MobiDBLite consensus disorder prediction 297 324 - -
Ssu2g1014 363 MobiDBLite consensus disorder prediction 104 126 - -
Ssu2g1014 363 MobiDBLite consensus disorder prediction 344 363 - -
Ssu2g1014 363 CDD LysM 58 94 IPR018392 -
Ssu2g1014 363 MobiDBLite consensus disorder prediction 244 324 - -
Ssu2g1014 363 ProSiteProfiles LysM domain profile. 50 94 IPR018392 -
Ssu2g1014 363 MobiDBLite consensus disorder prediction 26 45 - -
Ssu2g1014 363 Gene3D LysM domain 36 101 IPR036779 -
Ssu2g1014 363 SUPERFAMILY LysM domain 50 95 IPR036779 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu2g1014 Ssu-Chr2 47918722 47922301 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu2g1014 - - gmx:100786352 568.155
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu2g1014 2 47918722 47922301 Ssu2g1014 2 47918722 47922301 ECH