Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu2g0945 ATGAGTGAACTTCTTTTTGATGACATTTTCAAGGTTGAGGATGTAGACCCTGATGGTAAAAAGTATGACAAGGTTTCTCGGATTGTGGCACGGAGTGAGAAGCGTGACATGTACATGCTTCTAGATGTAAATACAGAGATTTATCCtatgaggaaaaaagaaagattctTGATGGCTTTGTCTCCTTCACTTGTTTTGAATACTAAGGATGGCTCAGTGTCAATTCAAGACAAGTTTGAATACATCATGCATGGAAGGTTATATAACATTACGAATGAGGGATGTTCAAAATCTCAGCTTGAAGTGTATGTAAACATTTCTATGTTATATTTGTGTTTTACTCCATTTTGTTCTCTTCAGAAATATCACCTAGGAATCTAG 381 0.3412 MSELLFDDIFKVEDVDPDGKKYDKVSRIVARSEKRDMYMLLDVNTEIYPMRKKERFLMALSPSLVLNTKDGSVSIQDKFEYIMHGRLYNITNEGCSKSQLEVYVNISMLYLCFTPFCSLQKYHLGI 126
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu2g0945 126 SUPERFAMILY Nucleic acid-binding proteins 3 105 IPR012340 -
Ssu2g0945 126 SMART rpol8neu 2 115 IPR005570 GO:0006351
Ssu2g0945 126 Pfam RNA polymerase Rpb8 7 110 IPR005570 GO:0006351
Ssu2g0945 126 PANTHER DNA-DIRECTED RNA POLYMERASE I, II 1 108 - -
Ssu2g0945 126 PIRSF RPB8 1 111 IPR005570 GO:0006351
Ssu2g0945 126 PANTHER DNA-DIRECTED RNA POLYMERASES I, II, AND III SUBUNIT RPABC3 1 108 IPR005570 GO:0006351
Ssu2g0945 126 Gene3D - 6 118 IPR012340 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu2g0945 Ssu-Chr2 46546812 46548779 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu2g0945 K03016 - gmx:100780342 178.718