Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu2g0918 ATGAAGCAATCAAAGGATCCGTTCGAAGCAGCATTCGAGGAATCGCCGCCAGAATCCCCTGCGGAGGCAGAGGCCGAGGCAGAGACGCAGAACcccacttcttcttcttctgtggTGCCACTTGTTCCACAACCTCCTCAGACTCAGAAGCCGAAGAACAAAGAcgaggaagaggaggaggaggaggacaACATGGACGTCGAGCTTTCCAAGCTCCCTTCCGCCGGTGACCCTCACAAAATGGCCAAGATGCAGTCAGTAATTGAAGGgTCAATTTTGACGCAATTCACCGAACCGCAGATGAGTAGATACGAGTCCTTTCGGAGGGCTGGGTTTCAGAAAGCTAACATGAAAAGGTTATTAGCTAGCATCACAGGGACCCAGAAAATTTCTGTGCCAATGACGATTGTAGTATCAGGCATTGCAAAAATGTTTGTTGGTGAAGTTATTGAAACAGCTAGAATAGTTATGAAAGAGAGGAAGGAATCTGGACCAATCCGGCCTTGTCATCTGAGAGAAGCATATAGACGACTAAAGCTTGAAGGAAAAGTCTTTAAGAGATCAGCCTCGAGGCTCTTCCGGTAG 585 0.4359 MKQSKDPFEAAFEESPPESPAEAEAEAETQNPTSSSSVVPLVPQPPQTQKPKNKDEEEEEEEDNMDVELSKLPSAGDPHKMAKMQSVIEGSILTQFTEPQMSRYESFRRAGFQKANMKRLLASITGTQKISVPMTIVVSGIAKMFVGEVIETARIVMKERKESGPIRPCHLREAYRRLKLEGKVFKRSASRLFR 194
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu2g0918 194 SUPERFAMILY Histone-fold 96 184 IPR009072 GO:0046982
Ssu2g0918 194 PANTHER TRANSCRIPTION INITIATION FACTOR TFIID SUBUNIT 11-RELATED 51 194 IPR045127 GO:0005669|GO:0006367|GO:0051123
Ssu2g0918 194 CDD TAF11 96 179 IPR006809 GO:0005634|GO:0006367
Ssu2g0918 194 MobiDBLite consensus disorder prediction 1 79 - -
Ssu2g0918 194 MobiDBLite consensus disorder prediction 26 43 - -
Ssu2g0918 194 Pfam hTAFII28-like protein conserved region 92 177 IPR006809 GO:0005634|GO:0006367
Ssu2g0918 194 Gene3D Histone, subunit A 96 185 IPR009072 GO:0046982
Ssu2g0918 194 PANTHER TAFII28-LIKE PROTEIN-RELATED 51 194 - -
Ssu2g0918 194 PANTHER TAFII28-LIKE PROTEIN-RELATED 1 38 - -
Ssu2g0918 194 PANTHER TRANSCRIPTION INITIATION FACTOR TFIID SUBUNIT 11-RELATED 1 38 IPR045127 GO:0005669|GO:0006367|GO:0051123
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu2g0918 Ssu-Chr2 46088426 46090984 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu2g0918 K03135 - gmx:100305481 240.736