Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu2g0895 ATGGAAGACATGCAGCATGAGCCAATTCTTGTGGCAGTCATTAAGCACCTCTTGGACAAACCAAACTTCAGTACAGTGTTTTCTGAGTCAATGaagaatatagaaattaatgaAAGCTTTTTAGAAAGTTTTTGTAATGGATTGCAGTTATCTTTATTGGAAAAAATTGTCATCAgtcttgctttatctgattctGAGCATCCTGATGTCAGGCTGTGTGGCAAAAATTTTTGCATGGCTCGGATTGAGGAATTGTGTGCCAACCCTGGTTCTTTGAGTTGCCATGAGCAAATTCACAATATTATCATGTTCCTAAAGCAGTCTGAGGGTCTTTCCAAGCACGTGGATTCCTTTATGCAGATATTATCACTTGTGCAGTTCAAAGACACGCCACCTTTTGTCTTGACTCCATTGCTTCCTGATGAGATGCATGAGGCTGATTTTTTAAGGAATATGGAGTTGTTCCACGAGAGTGGAGAAAATGATTTTGATGCTATTTTGGCAGACATACAGAAGGAAATGAACATGGGTGATATCATGAAGGAACTAGGTTATGGATGCACGGTTGATGTCTCACAGTGCAAGGAAATATTTTCGCTCTTCTTACCTTTAACTGAAAAAACACTCTCTAAATTACTTGGTGCTATTGCTTGTACCCATACTGGACTGGAGGACAACCAAAACACATACATAACTTTTCGTGCAGCCCATGGATACAATGTGTCTGAGTTGCCGCCGCTGAACTCTTGGAATATTGATGTCTTGATTGATACAGTCAAGCATCTTGCACCTCAAACCAATTGGGTACGCGTTATTGAAAATCTTGATCATGAAGGATTTTTCCTTCCTAGTGAAGAAGCGTTCTCTTTTCTCATGTCTGTATATAAACATGCCAGTAAGGAACCATTTCCTCTCCATGCCATCTGTGGGTCCGTCTGGAAGAATACTGAGGGTCAGCTGTCTTTCCTTAAATATGCTGTATCAGCACCACCGGAAATGTTTACCTTTGCACACTCAGGAAGACAGCTGGCATATGTTGATGCAATTAATGGCCACAAGCTTCAAAATGGACATGCAAATCATGCATGGCTGTGTCTTGACCTTTTAGATGTCCTCTGCCAGCTGGCTGAGAAGGGTCATGCCAGTATTGTTCGACCAATCCTTGATTATCCCCTTAAACACTGTCCTGAAGTCTTGCTTCTAGGGATGGCACATATTAATACTGCCTACAACCTCTTGCAACGGGAAGTATCTCTGATTGTTTTTCCCATGATATTAAAAAGTGCTGTAGGCAGTGGGATGATTCTACACCTTTGGCATGTTAATCCAAATCTGGTCTTGAGAGGGTTTATTGATTCTCAAAACAATGATGCAGACAGCATTATAAGAGTTGTGGACATCTGCCAGGAGCTAAAGATTCTATCATCCGTGGTGGAAATTATTCCCTCTTATTATAGTATAAGGTTAGCAGCTATTGCATCAAGAAAAGAATTCCTTGACCTCGAGAAGTGGTTGAGTAGCAACTTAACTACATATAAGGAAGTCTTTTTTGAGGAGTGCCTCAAGTTCTTAAAGGATGCCCATTTTGGTGGATCACAGAACCTTTCTGGCAGATCTTTTCATCAGTCTGGTGCTGTTCTGAGTCTCTATGCTGAGACAACTGCTACTGTTTTGAAGGTTCTTAAATCTCATACTGACTTGGTTGCCTCTAGACAACTTTCTGAGGAGTTGGAGAGGCTGCATATATCTATTATAGATTCGAATCCGAGGCTTCAAAATGGTGGGACTGTTGATTCATCTACTTCTGACGGATATGCGGATGACATTGAGGCAGAAGCAAACTCCTACTTCCATCAAATGTTTTCTGATCAGTTAACCATTAATGCGATGGTGCAAATGCTTGCTCGATTCAAGGAATCTTCAGTGAAgagGgagaaatcaatttttgaatgcATGATTGCGAACTTGTTTGAGGAATATAGATTTTTCCCAAAGTATCCTGAAAGGCAACTCAAAATTGCTGCAGTTCTCTTTGGTTCTGTGATCAAGCATCAGCTTGTAACTCATCTATCTTTGGGGATTGCTCTTCGTTATGTTCTTGATGCATTGCGCAAGCCTGCAGATTCGAAAATGTTTTTGTTTGGAAGTCTGGCATTGGAGCAGTTTGTGGATCGTCTTATTGAGTGGCCTCAGTATTGCAATCATATTCTTCAAATTTCCCATTTGCGCAGTACACATTCAGAAATAGTTGCTTTCATTGAACAGGCTCTCGCCAGGATTTCCTCTGGTCATTCAGATGTTGATGTGGCAAGTCATACTTCCGTTATTAGTAACCATCATTCTGCACAGGCTACATTAGGGCATGTAGAGCAGCTCAGTGGCTCGAACATCATACAACCTGGGCAGCACCATTTGTCACTGCAGCTTCAACAGAGACGTGAAAATCCCTTGGATGATCGTCACAAAACTTCTGTTGGTCCATCTGCTGATGTAAAACCATTGTTATCTTCTCTAGGGCAGTCTTCAGTACTAACACCTACTGATGTTTCTAGTACTAATAAGTTACATGGCACAGTCAGCACCTCGTCAATGCTATCTTCTTCTCCTGGTTTTGTTCGTCCTTCCCGTGGAGCTACTTCTACCAGGTTTGGATCTGCCTTGAATATTGAAACTTTGGTTGCTGCTGctgagaaaagagaaattccTATTGAGGCTCCAGGGTCAGAGGTTCAGGAcaagatattatttataattaataatgtttctGCTGCTAATATTGAAGCTAAAGCAAAAGAGTTCactgaaattttgaaagagCAGTACTATCCTTGGTTTGCACAGTATATGGTTATGAAAAGAGCAAGCATTGAGCCAAATTTCCATGACTTGTACCTGAAATTCCTGGATAAAGTTAATTCAAAGGTTTTGAACAAAGAGATTGTCCAGGCAACTTATGAAAATTGCAAGGTTCTTTTAGGATCGGAGCTCATAAAATCAAGTTCAGAGGAACGCTCTTTGCTTAAAAATTTGGGGAGTTGGCTTGGAAAGTTAACTATTGGCCGGAATCAGGTTTTGAGGGCTCGTGAAATAGACCCAAAGTCTTTGATTATAGAGGCATATGAGAAGGGGCTAATGATTGCTGTTATTCCGTTTACGTCAAAGGTCCTCGAACCATGCCAAAGCAGTCTTGCATATCAACCTCCTAATCCTTGGACTATGGGCATCTTGGGATTGCTTGCTGAGATTTATTCAATGCCAAACTTGAAAATGAACCTCAAGTTTGACATAgagGTTTTGTTCAAAAATCTTGTTGTAGATATGAAGGATGTCACACCAACTTCTCTCCTGAaggatagaaagagagagatcgAAGGAAATCCTGATTTCTCTAATAAAGATGTTGGGGCATCTCAAGCACAAATGATCCCTGATATAAAATCTGGCCTTGTACCTCCAGTAAATCAAGTGGATTTACCACTTGAAGTCACCAATCCATCCAATACTGGGGCTCATCCACATATACTGTCTCAGTATGCTGGTCCTCTTCATATTTCCTCGGGAGCATTGATGGAAGATGAAAAGGTTACACCTCTGGGAATGTCTGATCAACTTCCCTCTGCTCAAGGACTGTTACAAGCAAGTCCTGCTCCAGCACCTTTTTCTCTTAGCCAGCTTCCGACACAGATACCTAATATTGGGACTCATGTTATTATCAACCAAAAGCTCAGTGGTTTTGGGTTGCAAATGCATTTTCAAAGaGCGGTACCCGTTGCAATGGACAGAGCTATCAAAGAGATAGTGTCGAGTATTGTGCAGCGTAGTGTCTCCATAGCAACACAAACAACCAAGGAGCTTGTTTTAAAGGATTATGCTATGGAATCTGACGAGACACGTATATTAAATGCTGCACACTTGATGGTTGCTAGTCTGGCTGGAAGTTTGGCTCATGTTACGTGCAAAGAACCATTACGGGCATCAATATCTGGTCAACTGAGGACTTCACTTCAGAACTTAAATATTGCTAATGAAATTTTGGAACAAGCTGTGCAACTTGTCACCAATGATAATCTTGATCTAGGCTGTGCAGTCATTGAACAGGCTGCTACTGATAAGGCAATAAACACCATTGATACAGAGATTGGTCAACAACTCTCTTTGAGAAGGAAGCATCGAGAAGGTATGGGTTCTACATTTTTTGATGCAAATTTGTATCCACAAGGTTCTATGGGTGGTGTTCCTGAGCCTCTTCGCCCCAAGCCTGGTCAGTTGTCCCTCTCACAACAGCGTGTCTATGAGGACTTTGTTCGGCTTCCCTGGCAAAACCAGTCTAGCCAGAGCTCACATTCGATGTCTGCTGGTGTTGCTGTTCAATCTGGCAATACTGGTCTTAATGGCACCAATGGTTCTGTATCAGGGCAGATTAACCCTGGTTACGCTGTGAGCACAGGATATGAAGGAGTATCTCGACCATTAGATGATATGACAGAATCTAATTTGGCTCCACATTTTAGTGCTTCCTCAATTCACATTAGAGCAGCTGATAGTGTTTCCCAGCATAGTTTGGAGAAAGACTCTGTTGCCTCATTTCCTTCAGCTGCTTCCACCCCTGAGTTGCACGCTGTTGATTCTTCGGATGTGAAAGAATCTGGAGCTTCTTCACAGCCACTAGTTACATCGGGTGCTGTGGAGCGCCTTGGAAATAGTTTCTTGGAGCCTTCTCTCAGTACAAGAGATGCGCTAGATAAATTCCAAATTGTCGCACAAAAGTTGGAAGCTATGGTCAATGATTCCAGGGATGCAGAAATACAGGGTGTCATTTCTGAGGTTCCTGAGATCATACTTAGATGTGTTAGTCGAGATGAGGCAGCTTTAGCTGTGGCTCAAAAGGTTTTCAAGGGTTTGTATGATAATGCAACGAACAACATTCATGTCTCTGCTCATCTTGCAATCCTGACTGCCATTCGTGATGTTTGCAAGCTTGCTGTCAAGGAGCTTACTAGTTGGGTAATTTACtcggaagaagaaaggaaatataACAAAGAAATTACTGTTGGCCTCATCCGTAGTGAATTGCTAAATCTTACTGAGTATAATGTTCATATGGCAAAACTTATTGATGGAGGAAGGAACAAGGCTGCAACGGAATTTTCCATTTCCCTTCTTCAAATCCTGGTTATTGAGGAACCTAAAGTTATTTCAGAACTTCACAATCTTGTTGATGCTTTGGCAAAGctTGCTACAAAGCCTGGATGCCCTGAGTCATTACCACATCTTCTTGAAATGATCAAGAATCCTGCTGCTCTATCCTCTAGTAATGCTGGAAAGGAGGATAAGGCAAGACAATCAAGAGACAATAAGGGTCCTGGTCTGCTACCTGCAAACAGGGAAGAGTTCAACAGTGTAGATTCTATTGAACCAGATCCTGCTGGGTTCCGGGAGCAGGTTTCTATGTTGTTTACAGAATGGTATAGGATATGTGAACTTCCTGGTGCCAATGATACAGCTTCTGCCCACTTCATCTTACAATTGCATCAGAATGGGCTGCTTAAGGGGGATGATCTTACAGATCGCTTTTTCCGACTATTGATGGAACTAGCTGTTGCACATTGCTTATCCACTGAGATGATTAATTCAGGGTCACTGCAATCTCAACCGCTGCAGGCCATGTCATTTCTTGCAATTGATATTTATGCAAAGCTCGTCTTCTCAATCTTGAAGGGATCAAACaaactctttcttctttccaaGATTCTGGCAGTTACTGTCAGATTCATTATAAAAGATGCAGAGGAGAAGAAGGCCTCTTTTAATCCAAGGCCACTTTTCAGATTGTTCATCAACTGGCTTCTAGATCTTGGTTCACTTGAGCCTGTTACTGATGGTGCAAATCTCCAGATTTTGACTGCTTTTGCCAATGCATTTCATGCTTTGCAGCCCCTCAAAGTTCCTGCCTTCAGTTTTGCATGGCTTGAGTTGATTAGTCACAGGAGCTTCATGCCAAAAATGTTGACTGGTAATGGTCAAAAAGGTTGGCCTTATATCCAAAGGTTGCTGGTAGATCTGTTCCAATTTATGGAGCCTTTTCTGAGGCATGCTGAACTTGGAGACCCGGTTCGAGTCCTCTATAAAGGCACACTTAGGGTGCTCTTAGTGCTACTTCATGACTTCCCTGAGTTTCTATGTGACTATCACTTTACCTTTTGTGATGTTATTCCTCCAAGTTGCATACAGATGAGGAATATCATTCTAAGTGCATTTCCGCGCAGTATGAGGCTGCCAGATCCATCTACTCCTAATTTGAAGATTGATTTGCTTCAGGAAATAACCCAATCACCCCGCATTCTTTCTGAGGTTGATGCAGCACTTAAAGCAAAGCAGATGAAGGCTGATGTAGATGAATACCTTAAGACAAGGCAACCGAATTCTCCATTTTTATCTGAATTGAAGGAGAAGCTGCTTCTCTCTCCCAATGAAGCTGCCTCTGCTGGGACTCGATACAATGTGCCGTTAATCAACTCACTTGTACTATATGTTGGAATGCAGGCAATCCAGCAGCTTCAGGGACGAACTCCCCATTCACAATCATCAGCAAATGCTTTCCCATTAGCCGTATTTTCTGTTGGTGCTGCATTGGATATTTTCCAGACACTAATTGTGGACTTGGATACTGAAGGGCGCTACCTTTTTCTAAATGCTATTGCCAACCAACTTCGTTATCCTAATACTAATACACACTACTTTTCCTTCATCCTTCTGTACTTGTTTGCAGAATCAAACCAGGAAGTTATCCAAGAACAAATTACTAGAGTCTTGTTAGAACGCCTAATTGTTAACCGACCGCATCCCTGGGGCCTCCTCATTACTTTTATTGAGTTGATCAAGAATCCTAGGTACAATTTTTGGAACCGGACTTTCATAAGATGTGCGCCGGAGATCGAAAAACTGTTTGAATCGGTGTCAAGATCTTGTGGAGGTCCGAAACCAGTGGATGATAGCATGGTCTCGGGTTGGGTCTAA 7017 0.4104 MEDMQHEPILVAVIKHLLDKPNFSTVFSESMKNIEINESFLESFCNGLQLSLLEKIVISLALSDSEHPDVRLCGKNFCMARIEELCANPGSLSCHEQIHNIIMFLKQSEGLSKHVDSFMQILSLVQFKDTPPFVLTPLLPDEMHEADFLRNMELFHESGENDFDAILADIQKEMNMGDIMKELGYGCTVDVSQCKEIFSLFLPLTEKTLSKLLGAIACTHTGLEDNQNTYITFRAAHGYNVSELPPLNSWNIDVLIDTVKHLAPQTNWVRVIENLDHEGFFLPSEEAFSFLMSVYKHASKEPFPLHAICGSVWKNTEGQLSFLKYAVSAPPEMFTFAHSGRQLAYVDAINGHKLQNGHANHAWLCLDLLDVLCQLAEKGHASIVRPILDYPLKHCPEVLLLGMAHINTAYNLLQREVSLIVFPMILKSAVGSGMILHLWHVNPNLVLRGFIDSQNNDADSIIRVVDICQELKILSSVVEIIPSYYSIRLAAIASRKEFLDLEKWLSSNLTTYKEVFFEECLKFLKDAHFGGSQNLSGRSFHQSGAVLSLYAETTATVLKVLKSHTDLVASRQLSEELERLHISIIDSNPRLQNGGTVDSSTSDGYADDIEAEANSYFHQMFSDQLTINAMVQMLARFKESSVKREKSIFECMIANLFEEYRFFPKYPERQLKIAAVLFGSVIKHQLVTHLSLGIALRYVLDALRKPADSKMFLFGSLALEQFVDRLIEWPQYCNHILQISHLRSTHSEIVAFIEQALARISSGHSDVDVASHTSVISNHHSAQATLGHVEQLSGSNIIQPGQHHLSLQLQQRRENPLDDRHKTSVGPSADVKPLLSSLGQSSVLTPTDVSSTNKLHGTVSTSSMLSSSPGFVRPSRGATSTRFGSALNIETLVAAAEKREIPIEAPGSEVQDKILFIINNVSAANIEAKAKEFTEILKEQYYPWFAQYMVMKRASIEPNFHDLYLKFLDKVNSKVLNKEIVQATYENCKVLLGSELIKSSSEERSLLKNLGSWLGKLTIGRNQVLRAREIDPKSLIIEAYEKGLMIAVIPFTSKVLEPCQSSLAYQPPNPWTMGILGLLAEIYSMPNLKMNLKFDIEVLFKNLVVDMKDVTPTSLLKDRKREIEGNPDFSNKDVGASQAQMIPDIKSGLVPPVNQVDLPLEVTNPSNTGAHPHILSQYAGPLHISSGALMEDEKVTPLGMSDQLPSAQGLLQASPAPAPFSLSQLPTQIPNIGTHVIINQKLSGFGLQMHFQRAVPVAMDRAIKEIVSSIVQRSVSIATQTTKELVLKDYAMESDETRILNAAHLMVASLAGSLAHVTCKEPLRASISGQLRTSLQNLNIANEILEQAVQLVTNDNLDLGCAVIEQAATDKAINTIDTEIGQQLSLRRKHREGMGSTFFDANLYPQGSMGGVPEPLRPKPGQLSLSQQRVYEDFVRLPWQNQSSQSSHSMSAGVAVQSGNTGLNGTNGSVSGQINPGYAVSTGYEGVSRPLDDMTESNLAPHFSASSIHIRAADSVSQHSLEKDSVASFPSAASTPELHAVDSSDVKESGASSQPLVTSGAVERLGNSFLEPSLSTRDALDKFQIVAQKLEAMVNDSRDAEIQGVISEVPEIILRCVSRDEAALAVAQKVFKGLYDNATNNIHVSAHLAILTAIRDVCKLAVKELTSWVIYSEEERKYNKEITVGLIRSELLNLTEYNVHMAKLIDGGRNKAATEFSISLLQILVIEEPKVISELHNLVDALAKLATKPGCPESLPHLLEMIKNPAALSSSNAGKEDKARQSRDNKGPGLLPANREEFNSVDSIEPDPAGFREQVSMLFTEWYRICELPGANDTASAHFILQLHQNGLLKGDDLTDRFFRLLMELAVAHCLSTEMINSGSLQSQPLQAMSFLAIDIYAKLVFSILKGSNKLFLLSKILAVTVRFIIKDAEEKKASFNPRPLFRLFINWLLDLGSLEPVTDGANLQILTAFANAFHALQPLKVPAFSFAWLELISHRSFMPKMLTGNGQKGWPYIQRLLVDLFQFMEPFLRHAELGDPVRVLYKGTLRVLLVLLHDFPEFLCDYHFTFCDVIPPSCIQMRNIILSAFPRSMRLPDPSTPNLKIDLLQEITQSPRILSEVDAALKAKQMKADVDEYLKTRQPNSPFLSELKEKLLLSPNEAASAGTRYNVPLINSLVLYVGMQAIQQLQGRTPHSQSSANAFPLAVFSVGAALDIFQTLIVDLDTEGRYLFLNAIANQLRYPNTNTHYFSFILLYLFAESNQEVIQEQITRVLLERLIVNRPHPWGLLITFIELIKNPRYNFWNRTFIRCAPEIEKLFESVSRSCGGPKPVDDSMVSGWV 2338
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu2g0895 2338 Gene3D - 875 1125 - -
Ssu2g0895 2338 Pfam CCR4-NOT transcription complex subunit 1 TTP binding domain 590 759 IPR032193 -
Ssu2g0895 2338 MobiDBLite consensus disorder prediction 1527 1557 - -
Ssu2g0895 2338 Pfam CCR4-Not complex component, Not1 1950 2319 IPR007196 -
Ssu2g0895 2338 Gene3D - 2093 2324 - -
Ssu2g0895 2338 Pfam CCR4-NOT transcription complex subunit 1 CAF1-binding domain 903 1123 IPR032191 -
Ssu2g0895 2338 MobiDBLite consensus disorder prediction 834 872 - -
Ssu2g0895 2338 MobiDBLite consensus disorder prediction 811 872 - -
Ssu2g0895 2338 Pfam CCR4-NOT transcription complex subunit 1 HEAT repeat 420 562 IPR032194 -
Ssu2g0895 2338 MobiDBLite consensus disorder prediction 1443 1470 - -
Ssu2g0895 2338 Gene3D - 593 762 IPR038535 -
Ssu2g0895 2338 Pfam CCR4-Not complex, Not1 subunit, domain of unknown function DUF3819 1249 1391 IPR024557 -
Ssu2g0895 2338 PANTHER BNACNNG58980D PROTEIN 5 2337 - -
Ssu2g0895 2338 MobiDBLite consensus disorder prediction 1769 1806 - -
Ssu2g0895 2338 PANTHER CCR4-NOT TRANSCRIPTION COMPLEX 5 2337 IPR040398 GO:0017148|GO:0030015
Ssu2g0895 2338 Gene3D - 1800 2092 - -
Ssu2g0895 2338 Coils Coil 1335 1355 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu2g0895 Ssu-Chr2 45698508 45721914 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu2g0895 K12604 - gmx:100783935 4346.58
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu2g0895 2 45698508 45721914 Ssu2g0895 2 45698508 45721914 ECH