Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Ssu2g0892 | ATGGGGAAAATCCCTCCGTCGTTTCGCTCCGCGATCGCAAACCCGAACCTTCGAAACCCGTCTTCTCTGTTCCGTCCCGAAACCCCTTCCCCATCCAAACCCCCTCACTTCCCCAAGAAACCCCGCCCCCGAAAACCCCCGAAACAAGAACCCCCCGTGCCCCTCTTCAAATCCCCGAGCCTCGAAGACGCCAAAACCGTCTTCGACTCTATCGCGAACTCCTCCACGGACCCCCGCTTCCCGAACTCCCTCCTCCACTCCTACGCCAAAGTCGCCCCCACCCCCGCCGACTCCATCGCATTCCTCAACCACATCACCAAAACCCTCCCTTCCTTCTCCCCCGACCGCTCCACCTTCCACATCCTCCTCTTCCACGCGTGCAGCGGCAATTCCCCCAACCCCGCCCTCTCCCCGGTCCACCGAACCCTAAACCTCATGCTCGCCGCCGGCCTCGCCCCCGACAACGTCACCGCCGACGTCGCGGTCCGCGCGCTCTGCTCCGCCGGCCGCCTCGACCACGCCGTCGAATTGTTCAAAGAATTGGCCTCGAAGCACTGCTCCCCCGACCCCTACACCTTCAATTCCCTCGTCAAGCACCTCTGTAAGTCCCGCGCGTTGAGCACTGTATACTGTTTCATCGATGAAATGCGTGACAAGTTTCACATAAAGCCCGATCTCGTTACTTATACAATTCTAATTGATAATGTGTGTAATGGTAAGAATTTGAGAGAGGCGACGAGGTTGGTGAGTGTGCTTCACGAGGAGGGTTTCAAGCCTGATTGCTTTGTTTACAATACAATTATGAAAGGTTATTGTGTGTTGAGCAGAGGGAGCGAGGCAATTGAGGTTTACAACAAGATGAAGGAGGAAGGGGTGGAGCCTGATCTTGTCACTTACAACACTTTGATTTTCGGGTTGTCGAAGTCGGGGAGAGTTACTGAGGCGAAGAAGCTGTTGAGCGTGATGGCGGAGAAGGGCTATTTTCCTGATGAGGTGACTTATACTTCCCTGATGAATGGGATGTGCAGGAAGGGGGACGCGCGGGCAGCACTGGCCTTGTTAGGGGAGATGGAGGCCAAAGGGTGCAGTCCGAACGAGTGCACGTATAACACGCTGCTGCACGGGTTGTGTAAGTCGAGGCTGTTGGAGAAGGCGGTTGAGTTCTACCGGGTGATCAAGTCCGGCGGGCTGAAGCTTGAGACAGCTTCTTATGCCACATTTGTCAGGGTGCTGTGTAGGGAGGGGAGAGTTGCAGAGGCCTATGAGGTGTTTGATTATGCGGTTGAGAGCAAGAGCTTGACGGATGTCGCTGCTTACTCGACGTTGGAGAGCACGCTTAAATGGCTCAAGAAAGCGAAAGAACAGGGGCTTGCTGTTTAA | 1380 | 0.5551 | MGKIPPSFRSAIANPNLRNPSSLFRPETPSPSKPPHFPKKPRPRKPPKQEPPVPLFKSPSLEDAKTVFDSIANSSTDPRFPNSLLHSYAKVAPTPADSIAFLNHITKTLPSFSPDRSTFHILLFHACSGNSPNPALSPVHRTLNLMLAAGLAPDNVTADVAVRALCSAGRLDHAVELFKELASKHCSPDPYTFNSLVKHLCKSRALSTVYCFIDEMRDKFHIKPDLVTYTILIDNVCNGKNLREATRLVSVLHEEGFKPDCFVYNTIMKGYCVLSRGSEAIEVYNKMKEEGVEPDLVTYNTLIFGLSKSGRVTEAKKLLSVMAEKGYFPDEVTYTSLMNGMCRKGDARAALALLGEMEAKGCSPNECTYNTLLHGLCKSRLLEKAVEFYRVIKSGGLKLETASYATFVRVLCREGRVAEAYEVFDYAVESKSLTDVAAYSTLESTLKWLKKAKEQGLAV | 459 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Ssu2g0892 | 459 | Gene3D | Tetratricopeptide repeat domain | 252 | 320 | IPR011990 | GO:0005515 | |
| Ssu2g0892 | 459 | ProSiteProfiles | Pentatricopeptide (PPR) repeat profile. | 295 | 329 | IPR002885 | - | |
| Ssu2g0892 | 459 | ProSiteProfiles | Pentatricopeptide (PPR) repeat profile. | 330 | 364 | IPR002885 | - | |
| Ssu2g0892 | 459 | PANTHER | PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN 1, MITOCHONDRIAL | 1 | 458 | - | - | |
| Ssu2g0892 | 459 | Pfam | Pentacotripeptide-repeat region of PRORP | 279 | 429 | IPR033443 | - | |
| Ssu2g0892 | 459 | ProSiteProfiles | Pentatricopeptide (PPR) repeat profile. | 225 | 259 | IPR002885 | - | |
| Ssu2g0892 | 459 | SUPERFAMILY | HCP-like | 266 | 431 | - | - | |
| Ssu2g0892 | 459 | ProSiteProfiles | Pentatricopeptide (PPR) repeat profile. | 189 | 219 | IPR002885 | - | |
| Ssu2g0892 | 459 | MobiDBLite | consensus disorder prediction | 12 | 26 | - | - | |
| Ssu2g0892 | 459 | PANTHER | PPR CONTAINING PLANT-LIKE PROTEIN | 1 | 458 | - | - | |
| Ssu2g0892 | 459 | Gene3D | Tetratricopeptide repeat domain | 55 | 251 | IPR011990 | GO:0005515 | |
| Ssu2g0892 | 459 | Gene3D | Tetratricopeptide repeat domain | 321 | 458 | IPR011990 | GO:0005515 | |
| Ssu2g0892 | 459 | TIGRFAM | PPR: pentatricopeptide repeat domain | 161 | 189 | IPR002885 | - | |
| Ssu2g0892 | 459 | TIGRFAM | PPR: pentatricopeptide repeat domain | 263 | 295 | IPR002885 | - | |
| Ssu2g0892 | 459 | TIGRFAM | PPR: pentatricopeptide repeat domain | 227 | 261 | IPR002885 | - | |
| Ssu2g0892 | 459 | TIGRFAM | PPR: pentatricopeptide repeat domain | 403 | 431 | IPR002885 | - | |
| Ssu2g0892 | 459 | TIGRFAM | PPR: pentatricopeptide repeat domain | 367 | 398 | IPR002885 | - | |
| Ssu2g0892 | 459 | TIGRFAM | PPR: pentatricopeptide repeat domain | 332 | 366 | IPR002885 | - | |
| Ssu2g0892 | 459 | TIGRFAM | PPR: pentatricopeptide repeat domain | 297 | 331 | IPR002885 | - | |
| Ssu2g0892 | 459 | Pfam | PPR repeat family | 153 | 202 | IPR002885 | - | |
| Ssu2g0892 | 459 | ProSiteProfiles | Pentatricopeptide (PPR) repeat profile. | 365 | 399 | IPR002885 | - | |
| Ssu2g0892 | 459 | MobiDBLite | consensus disorder prediction | 1 | 59 | - | - | |
| Ssu2g0892 | 459 | ProSiteProfiles | Pentatricopeptide (PPR) repeat profile. | 400 | 434 | IPR002885 | - | |
| Ssu2g0892 | 459 | ProSiteProfiles | Pentatricopeptide (PPR) repeat profile. | 260 | 294 | IPR002885 | - | |
| Ssu2g0892 | 459 | Pfam | Pentatricopeptide repeat domain | 215 | 271 | IPR002885 | - | |
| Ssu2g0892 | 459 | ProSiteProfiles | Pentatricopeptide (PPR) repeat profile. | 154 | 188 | IPR002885 | - |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Ssu2g0892 | 242 | 456 | Glycosyltransferase | AT1G05670 | 30.594 | 2.57e-22 | 98.2 |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Ssu2g0892 | - | - | gmx:100782321 | 738.413 |