Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu2g0890 ATGTTCCTTTCACTCAGATACTCCTTCacgttcttcttctctctcctcctcgcatcatcatcatcatcatcgccTTCACACATTGCTTCAACAACCACGCTAGGTCACACATCCACACCACCAGCCACCAAAATAGCCATCACAAACCGCCACATTCAAAGCCTCACCAATGCAGCCAGAGGCAGCAAAATCACGGGCATATCGCAATTCAAACGATACCTTTCTCGTTTCGGGTACCTACACAACAACAGCACATTCAGTGATGAATTTGATGCCACGTTGGAATCGGCTCTTGTTAGATACCAACGAAACCTTGGGCTCCAAGTAACCGGCAAGCTCGATTCCAGCACAGTTTCTCAAATGATCACACCGAGATGCGGTGATCCGGACGCGAACACAGCACCCCACAACCACGATCATCGCCACAATCGCGTTCCCTCAACGCACTCGACGAAGAATTTTGTGTTTTTCCCCGGAAAACCACGTTGGTCACGTCCCATGCCCATGACACTCACCTATGCCTTCTCACGCGAGAACATGATCCACAGTTTGAGCATGAGGGAGATAAGGGAAGCATTCCAACGCGCATTCCTAAGGTGGGCTTCCGTTATTCCGGTTGGTTTCGTTGAAGTGAGTGACTTTGAAGTTGCCGAGTTGAAAATAGGGTTTTACAATGGGGAGCACGGTGATGGCGAGCCCTTTGACGGGGTGCTTGGAGTGTTGGCCCATTCTTTTTCGCCGGAGATCGGGCGGCTCCACCTCGACGCGGCCGAGACGTGGGCGGTGGACTTCCGGGCAACCGCGTCGGAGGCGGCGGTGGACTTGGAGTCGGTGGCCACGCACGAGATAGGACACTTGTTAGGGTTGTCTCATAGTTCCGTGAAAGAGGCTGTTATGTATCCAAGTTTGAGGCCTAGAGGCAAGAGGGCTGATTTGAACATTGATGACATAAAGGGAGTGCAATCTCTATACGGGTCAAACCCTAATTTCAGATCCGAGTGGTCACTAGAGTCTGATATGTCCGCAAATCAAGGTTCTGATTTTGGAGTGAAACCTTTGAGggGTTGTACTTCTTTCgacctttttattcttttgtgcTTGTGA 1104 0.4755 MFLSLRYSFTFFFSLLLASSSSSSPSHIASTTTLGHTSTPPATKIAITNRHIQSLTNAARGSKITGISQFKRYLSRFGYLHNNSTFSDEFDATLESALVRYQRNLGLQVTGKLDSSTVSQMITPRCGDPDANTAPHNHDHRHNRVPSTHSTKNFVFFPGKPRWSRPMPMTLTYAFSRENMIHSLSMREIREAFQRAFLRWASVIPVGFVEVSDFEVAELKIGFYNGEHGDGEPFDGVLGVLAHSFSPEIGRLHLDAAETWAVDFRATASEAAVDLESVATHEIGHLLGLSHSSVKEAVMYPSLRPRGKRADLNIDDIKGVQSLYGSNPNFRSEWSLESDMSANQGSDFGVKPLRGCTSFDLFILLCL 367
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu2g0890 367 SMART col_5 159 326 IPR006026 GO:0006508|GO:0008237|GO:0008270
Ssu2g0890 367 CDD ZnMc_MMP 162 325 IPR033739 GO:0008237|GO:0008270
Ssu2g0890 367 PRINTS Matrixin signature 312 325 IPR021190 GO:0004222|GO:0006508|GO:0008270
Ssu2g0890 367 PRINTS Matrixin signature 193 208 IPR021190 GO:0004222|GO:0006508|GO:0008270
Ssu2g0890 367 PRINTS Matrixin signature 217 245 IPR021190 GO:0004222|GO:0006508|GO:0008270
Ssu2g0890 367 PRINTS Matrixin signature 278 303 IPR021190 GO:0004222|GO:0006508|GO:0008270
Ssu2g0890 367 PRINTS Matrixin signature 121 134 IPR021190 GO:0004222|GO:0006508|GO:0008270
Ssu2g0890 367 Pfam Putative peptidoglycan binding domain 67 121 IPR002477 -
Ssu2g0890 367 SUPERFAMILY Metalloproteases ("zincins"), catalytic domain 155 328 - -
Ssu2g0890 367 Gene3D Collagenase (Catalytic Domain) 55 331 IPR024079 GO:0008237
Ssu2g0890 367 PANTHER METALLOENDOPROTEINASE 4-MMP 31 353 - -
Ssu2g0890 367 SUPERFAMILY PGBD-like 59 130 IPR036365 -
Ssu2g0890 367 MobiDBLite consensus disorder prediction 21 41 - -
Ssu2g0890 367 Pfam Matrixin 167 325 IPR001818 GO:0004222|GO:0006508|GO:0008270|GO:0031012
Ssu2g0890 367 ProSitePatterns Matrixins cysteine switch. 124 131 IPR021158 GO:0004222|GO:0006508|GO:0008270|GO:0031012
Ssu2g0890 367 PANTHER MATRIX METALLOPROTEINASE 31 353 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu2g0890 Ssu-Chr2 45372439 45373633 Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu2g0890 - K07999 gmx:100781237 568.54