Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu2g0836 ATGAGAAGGTTTAACTTAAACCCTATCTTATCCCCCATTCGTGGAAGAAGTAAGTGTGCAGTGATGGGAATCCTGGCGTTGCCGTTAGTCATCTCCGTTCTCAAACCCCACACCACCACTCGCCTCCGCCCCTCACACTCCCTCCTCCGCCGCCACCGCCAATTCGCCACCACCGTCTCCGCCACCGCCACTCCTTCTTctcattctccttctccttctctctcacGCCGctcttcttcttattcttcAACACAGTCCAACACTCGTCCCCTTAACTCCTCAACCCTCACCTTCCAGCAAGCCATTCAACGCCTTCAGGAATATTGGGCGTCCGTTGGATGTTCCATAATGCAATGCAGCAACACAGAGGTTGGAGCTGGGACTATGAATCCTCTTACATATTTAAGGGTTCTCGGCCCAGAACCATGGAATGTCGCGTATGTGGAACCTAGCATCCGCCCTGATGATAGTCGTTATGGAGAAAACCCAAATAGGCTCCAAAGACACACTCAATTTCAGGTGATATTGAAGCCTGATCCTGGAAATTCACAGGATCTATTTATCTGCAGCCTTTCTGCTTTAGGTATTGATATTACTGCACATGATATACGATTTGTGGAAGACAACTGGGAGAGTCCgGTTCTTGGTGCTTGGGGTTTGGGCTGGGAAATCTGGATGGATGGGATGGAGATTACTCAATTCACCTACTTTCAGCAGGCGGGAAGTCTTCAGTTATCACCTGTATCTGTAGAAATTACTTATGGCCTTGAGCGTATCCTCATGTTACTGCAGGGGGTTGATCACttcaagaagataaaatattctGATGGAATTACATATGGAGAGCTGTTCTTGGAGAATGAGAAGGAAATGAGTTCATATTACTTGGAGCATGCTAGTGTTGAtcatgttcaaaaacattttgatttCTTCGAGGAGGAAGCTCGTTGCTTACTTTCTTCAGGCCTTGCAATCCCTGCGTATGATCAGCTTCTGAAAACATCTCATGCTTTTAATATCTTAGACTCCAGGGGCTTTGTTGGAGTAACAGAGCGTGCTCGATATTTTGGTCGCATGCGTAGTTTAGCTCGCCAATGTGCACAACTTTGGTTGAAGACAAGGGAGATGCTTGGCTTCCCCCTTGGTTTTATTTCTGAACCCGATCATTTTGTATTGCCAAAAGAAGTTTTTGAGGCTGCATGTGAAAAGGTGCATGATCATTCAAGAGCATTTGTTCTTGAAATTGGGACTGAAGAGATGCCACCTCAAGATGTTGTTGATGCAAGCAAGCAaCTGAAAGATTTAATGCTACAACTACTTGAACGGCAAAGGTTAAAGCATGGTGAAGTGCAAGTTTTTGGCACCCCACGTAGATTAGTGGTTGCTGTTGAAAATCTTTGCACAAAACAAGCAGAAAAGGAGGTTGAAATTCGAGGTCCTCCTGTTTCAAAAGCATTTGATCATGAAGGAAATCCAACAAAGGCCATTGAGGGTTTTTCTCGTAGATACTCTGTTCCACTTGACCTGGTATACAGAAAGGTCGATGGGAAAACAGAATATGTTTATGCTCGTATAAAGGAGTCATCAAGACATGCTCTGGAGGTTTTGTCCGAAGATTTGCCTGCTACTATTGCTAAAATTTCATTTCCAAAGACAATGCGTTGGAATTCTCAGgtGATGTTTAGCAGGCCTATCCGTTGGATTTTGGCCCTGCATGGAGATGTAGTAGTCCCGTTAATGTTTGCTGGGGTGACAagTGGAAACTTGTCGTGTGGTCTTCGTAATACTTCTTCAGCTGTGGTCCAGGTGGAAGGTGCAGAATCTTATGCAGTTGCAATGAAAAATGTGGGAATCAATGTTTCAGTTGAGGACcgtaagaaaattatttttgagcaATCTAATGCATTAGCAGAAAGTGTAAATGGCCAAATTCTGATTCCGAAAGGTTTGCTTGACGAGgttgTAAATCTTGTTGAGGCACCTTTTCCTGTGCTTGGAAAGTTTAAAGAAACCTTCTTAGATCTTCCAAAAGATCTTTTGACTATGGTTATGCAAAAGCATCAAAAGTATTTTGCTGTATGTGATGCTAATGGACAATTATTGCCTTATTTTGTTGCTGTTGCAAATGGGGCAATTGATGAAACTACAGTGAGGAAAGGAAATGAAGCTGTGCTCAGGGCTCGCTATGAAGATGCTAGGTTCTTTTATGAGATGGACACTCGTAGAAGGTTTTCAGAATTCCGAAAGCAACTgaaaaatattctctttcaTGAGAAGCTTGGAACCATGCTGGATAAGATGACTCGTGTTGAAAACATGGTTACTAAGCTAAGTTACATGCTAGATATCAATGAAGATGTGCAACAAATTATCCGGGATGCTGCCTCACTTGCTATGTCTGATCTTGCCACTGCAGTTGTCACTGAATTTACCTCGCTTTCTGGAATTATGGGGCATCACTATGCCCTTAGAGATGGATACTCAGAGCAGATTGCAGAGGCCTTGCTTGAGATCACGCTTCCTAGATTTTCTGGGGACACACTTCCTGAAAGTGATGCTGGCATAGTTTTGGCAATTGCTGATAGATTAGATAGCCTGGTAGGTTTATTTACAGCTGGTTGTCAACCTAGTTCTACAAATGATCCTTTTGGTCTGCGAAGAATCTCGTATGGTCTTGTGCAACTGTTGgtggaaaagaataaaaatctaGATTTTAGAAAGGCCCTGGAACTTGCTGCAGATGTCCAGCTCATTAAAGTAGATCCTCATGTAATAGATGATGTACATCAATTTGTTACTCGAAGATTAGAGCAATTTCTGGTTGACAAGGGGGTGAATGCAGAATTTGTTCGTTCAATCCTTGTAGAAAGAGCAAATTTTCCCTGTCTTGCTGCAAAATCAGCTTATAAAATGGAAGAATTATCAAGAGGGAACCTTTTTCCTAAAGTAGTTGAAGCATACTCCCGGCCAACAAGAATTGTCCGCGGGAAGGAAGATGAACTTCATATGGAGGTGGATGAGGCTGCTTTTGTGGCAAATGAAGAGAGAGTTTTATGGAGCACATTTTTGTCAGTCAAGAAGAGTATCAGTCctgGTCTTGACATCGAtgattttgtagaaatttcatGTCAGTTAATACAGCCTCTTGAAGATTTCTTTAATAATGTCTTCGTAATGGTGGACGATGACAGGATCAGAGTGAACAGGTTAACTCTGCTAAAAGGAATTGCTGAACTCCCTAAAGGAATAGCAGATCTTACTGTTCTACCAGGATTTTAA 3279 0.409 MRRFNLNPILSPIRGRSKCAVMGILALPLVISVLKPHTTTRLRPSHSLLRRHRQFATTVSATATPSSHSPSPSLSRRSSSYSSTQSNTRPLNSSTLTFQQAIQRLQEYWASVGCSIMQCSNTEVGAGTMNPLTYLRVLGPEPWNVAYVEPSIRPDDSRYGENPNRLQRHTQFQVILKPDPGNSQDLFICSLSALGIDITAHDIRFVEDNWESPVLGAWGLGWEIWMDGMEITQFTYFQQAGSLQLSPVSVEITYGLERILMLLQGVDHFKKIKYSDGITYGELFLENEKEMSSYYLEHASVDHVQKHFDFFEEEARCLLSSGLAIPAYDQLLKTSHAFNILDSRGFVGVTERARYFGRMRSLARQCAQLWLKTREMLGFPLGFISEPDHFVLPKEVFEAACEKVHDHSRAFVLEIGTEEMPPQDVVDASKQLKDLMLQLLERQRLKHGEVQVFGTPRRLVVAVENLCTKQAEKEVEIRGPPVSKAFDHEGNPTKAIEGFSRRYSVPLDLVYRKVDGKTEYVYARIKESSRHALEVLSEDLPATIAKISFPKTMRWNSQVMFSRPIRWILALHGDVVVPLMFAGVTSGNLSCGLRNTSSAVVQVEGAESYAVAMKNVGINVSVEDRKKIIFEQSNALAESVNGQILIPKGLLDEVVNLVEAPFPVLGKFKETFLDLPKDLLTMVMQKHQKYFAVCDANGQLLPYFVAVANGAIDETTVRKGNEAVLRARYEDARFFYEMDTRRRFSEFRKQLKNILFHEKLGTMLDKMTRVENMVTKLSYMLDINEDVQQIIRDAASLAMSDLATAVVTEFTSLSGIMGHHYALRDGYSEQIAEALLEITLPRFSGDTLPESDAGIVLAIADRLDSLVGLFTAGCQPSSTNDPFGLRRISYGLVQLLVEKNKNLDFRKALELAADVQLIKVDPHVIDDVHQFVTRRLEQFLVDKGVNAEFVRSILVERANFPCLAAKSAYKMEELSRGNLFPKVVEAYSRPTRIVRGKEDELHMEVDEAAFVANEERVLWSTFLSVKKSISPGLDIDDFVEISCQLIQPLEDFFNNVFVMVDDDRIRVNRLTLLKGIAELPKGIADLTVLPGF 1092
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu2g0836 1092 Gene3D Bira Bifunctional Protein; Domain 2 83 299 IPR045864 -
Ssu2g0836 1092 TIGRFAM glyQ: glycine--tRNA ligase, alpha subunit 97 381 IPR002310 GO:0000166|GO:0004820|GO:0005524|GO:0005737|GO:0006426
Ssu2g0836 1092 SUPERFAMILY HD-domain/PDEase-like 739 887 - -
Ssu2g0836 1092 ProSiteProfiles Heterodimeric glycyl-transfer RNA synthetases family profile. 97 371 IPR006194 GO:0000166|GO:0004820|GO:0005524|GO:0005737|GO:0006426
Ssu2g0836 1092 TIGRFAM glyS: glycine--tRNA ligase, beta subunit 408 1089 IPR015944 GO:0000166|GO:0004820|GO:0005524|GO:0005737|GO:0006426
Ssu2g0836 1092 Hamap Glycine--tRNA ligase beta subunit [glyS]. 408 1089 IPR015944 GO:0000166|GO:0004820|GO:0005524|GO:0005737|GO:0006426
Ssu2g0836 1092 Pfam Glycyl-tRNA synthetase alpha subunit 98 375 IPR002310 GO:0000166|GO:0004820|GO:0005524|GO:0005737|GO:0006426
Ssu2g0836 1092 SUPERFAMILY Class II aaRS and biotin synthetases 97 375 IPR045864 -
Ssu2g0836 1092 PRINTS Glycyl-tRNA synthetase alpha subunit signature 150 165 IPR002310 GO:0000166|GO:0004820|GO:0005524|GO:0005737|GO:0006426
Ssu2g0836 1092 PRINTS Glycyl-tRNA synthetase alpha subunit signature 336 352 IPR002310 GO:0000166|GO:0004820|GO:0005524|GO:0005737|GO:0006426
Ssu2g0836 1092 PRINTS Glycyl-tRNA synthetase alpha subunit signature 228 248 IPR002310 GO:0000166|GO:0004820|GO:0005524|GO:0005737|GO:0006426
Ssu2g0836 1092 PRINTS Glycyl-tRNA synthetase alpha subunit signature 251 266 IPR002310 GO:0000166|GO:0004820|GO:0005524|GO:0005737|GO:0006426
Ssu2g0836 1092 PRINTS Glycyl-tRNA synthetase alpha subunit signature 202 226 IPR002310 GO:0000166|GO:0004820|GO:0005524|GO:0005737|GO:0006426
Ssu2g0836 1092 PRINTS Glycyl-tRNA synthetase alpha subunit signature 171 191 IPR002310 GO:0000166|GO:0004820|GO:0005524|GO:0005737|GO:0006426
Ssu2g0836 1092 Gene3D Class II aaRS and biotin synthetases; domain 2 300 379 - -
Ssu2g0836 1092 ProSiteProfiles Heterodimeric glycyl-transfer RNA synthetases family profile. 765 1054 IPR006194 GO:0000166|GO:0004820|GO:0005524|GO:0005737|GO:0006426
Ssu2g0836 1092 MobiDBLite consensus disorder prediction 58 92 - -
Ssu2g0836 1092 CDD GlyRS_alpha_core 97 375 IPR002310 GO:0000166|GO:0004820|GO:0005524|GO:0005737|GO:0006426
Ssu2g0836 1092 Pfam Glycyl-tRNA synthetase beta subunit 411 954 IPR015944 GO:0000166|GO:0004820|GO:0005524|GO:0005737|GO:0006426
Ssu2g0836 1092 PANTHER GLYCYL-TRNA SYNTHETASE 407 1092 IPR015944 GO:0000166|GO:0004820|GO:0005524|GO:0005737|GO:0006426
Ssu2g0836 1092 Hamap Glycine--tRNA ligase alpha subunit [glyQ]. 96 376 IPR002310 GO:0000166|GO:0004820|GO:0005524|GO:0005737|GO:0006426
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu2g0836 K14164 - gmx:100787365 1945.63
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu2g0836 2 43218467 43262252 Ssu2g0836 2 43218467 43262252 ECH