Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu2g0829 ATGGCTCCATTCCTCTTGTTTGCTTTCGTGTTTGCTAGTCAACTGATGGCTGGATTCAACACACCGCTACCACCTCCGTTCTATGGAAACCATATATCCATTCTCAGCATAGACGGTGGCGGCATCAGGGGGATTATTCCCGCAACTGTTCTTGATTACTTAGACAAGGCTCTTAAGGCTAAGGACCCAACAACATCTTTAGCACATTATTTTGATGTGATAGCAGGAACTAGTACCGGTGGAATCATGATTGCTATGTTAGCCGCCCCAAATTCATCTGACACCAATCGTCCTCTCTTTACTCCCTCAGAAGTCGTACACTCTTGGATACCAACATGTCCGTGGTACGATGGGAAGTTCTTACGAAATATAACTGGTGAGCTATTGAAAGAAACACGACTTAGTCAAACATTAACGAACGTGGTAATACCAACTTTCGACCAGAAGAAACTCAAGCCAGTTATATTCTCAAACTATAAGCTCGAGACAGATCCTCACTTAGATGCCAAACTCTCAGATATATGCATCGGGACATCGGCTGCACCGGGTTATCTACCACTCCACCAATTTAAGAATGATGGtgttgaatttaatttgcttGATGGTGCTCTGGCTGCTAATAATCCAgcGCTGGTTGCCGTCAGCGAAGTGATACAACACAATGCCCATAAAGAAATCCTGTTGCTGTCATTAGGAACTGGAAAAACAAAAGTTGAGAAGTTATATGATGCTGCTGATGACATTAAAGGCGAGTGTCAAACTGGGTGGCTATTTTGGAACAGTGGAGTTTTTGGTGAGTCTAGTACAGACATGATCCATTACTACCTTGCCGCCACAGTGTTCCCGGGCCTCATGCCTGAGAATAACTACCTTCGAATTCAGGAGTATAACCTGGATCCATCCATGCAAGCAATGGATAATGTTGATATAAAAAACATGGATAAACTTGAAAAGGTAGGAAATAAGCTGTTGCATCAAAAAGCTTTGAGGATGAATGTGAATACTTTTATCCCAGctgaaataaattatacaaatgcCCAGGCTCTTGACAGGTGCGTACACTCATGTTCTCAACaaggaaattttttatactctaTTATGCCTAAAATTaTGATGGCTAGATCCGATACAACGATACCACCTCCGCTCTATGGAGATCACGTATCCATTCTTAGCATAGACGGTGGTGGTATCAGGGGGATTATTCCCGCAACTGTTCTTGTTTACTTAGACGAGGCTCTTAAGAAAAAGGACCCAACAGCATCTTTAGCAGATTATTTTGATGTGATAGCAGGAACTAGTACCGGTGGACTCATGACTGCTATGTTGGCCGCCCCAGAGTCATGTGGCAGCAATCGTCCTATCTTTACTCCCTCTGGAGTAGTAGAATTCTACAAGAAATATGGCCCTGAAATATTTAAACCTAGGTATAAGTATCGACCTTGA 1446 0.4149 MAPFLLFAFVFASQLMAGFNTPLPPPFYGNHISILSIDGGGIRGIIPATVLDYLDKALKAKDPTTSLAHYFDVIAGTSTGGIMIAMLAAPNSSDTNRPLFTPSEVVHSWIPTCPWYDGKFLRNITGELLKETRLSQTLTNVVIPTFDQKKLKPVIFSNYKLETDPHLDAKLSDICIGTSAAPGYLPLHQFKNDGVEFNLLDGALAANNPALVAVSEVIQHNAHKEILLLSLGTGKTKVEKLYDAADDIKGECQTGWLFWNSGVFGESSTDMIHYYLAATVFPGLMPENNYLRIQEYNLDPSMQAMDNVDIKNMDKLEKVGNKLLHQKALRMNVNTFIPAEINYTNAQALDRCVHSCSQQGNFLYSIMPKIMMARSDTTIPPPLYGDHVSILSIDGGGIRGIIPATVLVYLDEALKKKDPTASLADYFDVIAGTSTGGLMTAMLAAPESCGSNRPIFTPSGVVEFYKKYGPEIFKPRYKYRP 481
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu2g0829 481 ProSiteProfiles Patatin-like phospholipase (PNPLA) domain profile. 35 214 IPR002641 GO:0006629
Ssu2g0829 481 PANTHER PATATIN 3 353 - -
Ssu2g0829 481 PANTHER PATATIN 369 476 - -
Ssu2g0829 481 Gene3D Cytosolic phospholipase A2 catalytic domain 384 480 - -
Ssu2g0829 481 Gene3D Cytosolic phospholipase A2 catalytic domain 28 362 - -
Ssu2g0829 481 SUPERFAMILY FabD/lysophospholipase-like 32 343 IPR016035 -
Ssu2g0829 481 Pfam Patatin-like phospholipase 35 213 IPR002641 GO:0006629
Ssu2g0829 481 Pfam Patatin-like phospholipase 391 445 IPR002641 GO:0006629
Ssu2g0829 481 SUPERFAMILY FabD/lysophospholipase-like 388 476 IPR016035 -
Ssu2g0829 481 ProSiteProfiles Patatin-like phospholipase (PNPLA) domain profile. 391 481 IPR002641 GO:0006629
Ssu2g0829 481 PANTHER XYLOSE ISOMERASE 369 476 - -
Ssu2g0829 481 PANTHER XYLOSE ISOMERASE 3 353 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu2g0829 Ssu-Chr2 42912806 42974112 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu2g0829 370 473 Miscellaneous Gene Families AT2G26560 55.238 9.95e-27 110
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu2g0829 - - gmx:100802647 485.723