Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu2g0806 ATGGAAGCGCTCAAACTGTGCAATCTAACATGGCACCCGCTGAAGCACTTCATTTACCCTCACGCATTTCGTCGAGCACCTCGCACGCTCGTTCTCCGCGCATGCTCTTCTTCCACCGCCGCCGACACCAGGGCCGCCGGTCGCAACCGCCGGAGCTCGGCGTCGTCGTCCCCCACTTCGACTTCCGATAGGGACGCCGTTCGAGCCATTCGCTTGAAGAAGGTTGAAGAATTGAGAAGCAAGGGACTTGATCCGTATGCTTATGAATGGCACAAAACTCATGGTGCTAATCAGCTGCAAGATATCTATAGAGATTTAGGAAATGGTGAGGAAAAAAATAGTGAGAATGACCATATATCTGTCGCAGGAAGAATTGTTGCTAGGAGGGCATTTGGAAAGCTTGTGTTTCTCACACTAAGAGATGATTCAGGGACAATTCAGCTCTATTGTGATAAAGAGAGACTCATAGATGATCAGTTTGAACAGTTGAAGGTGCATGTTGATATTGGTGATATATTAGGTGCAAGAGGAACAATAAAACGCACAGAAAAGGGAGAACTTTCTGTGTGTGTGCTATCTTTTGCAATCCTCACAAAATCTCTGCTTCCACTGCCTGACAAATATCATGGACTAACTGATATAGATAAACGTTATCGCCAGAGGTATGTAGATATGATCGCAAATCCAAAGGTAGCAGATGTATTCCGTAAAAGAGCAAAGGTTGTATCAGAGATACGGAGGACAATGGATTCTTTAGGTTTTGTTGAAGTTGAAACTCCAGTTTTGCagGGAGCAGCTGGGGGAGCAGAAGCCAGACCTTTTATTACATACCATAATTCTCTTGGAAGGGACTTATATCTGAGAATTGCAACTGAATTACATCTAAAGAGAATGCTGGTGGGTGGTTTTGAAAAGGTATATGAGATTGGTCGAATATTTAGAAATGAAGGAATTTCAACTCGACATAATCCTGAATTTACAACTATAGAGATGTACGAAGCATACTCGGATTATCAAAGCATGATGAATTTGGCAGAGGAGATCGTCACTCGATGTGCTCTTGCAGTTCATGGGAAGCTTTCCATTGATTATCAGGGAGTCGAGATATGTCTGGAAAGGCCATGGAAGAGGGAGACCATGCACAACCTTGTTAAAGAAACTGCTGGGATCGATTTCAATGAATTGGGAAATGATATTGAGGTTGCAAAGGGAGTTACTCTGGATACCCTTGGAAAGAATCTTGATAACAAGGATAAAGGTTCCATTGAAGCATGCCAATCTGTTGGCCATCTTCTCAATGAGgtTTTTGAGATTTTTGTAGAACCAAAGCTCATCCAACCTACATTTGTTTTAGACTATCCAATTGAGATATCTCCACTGGCCAAACCACACAGAAGATCCACAGGTTTGACTGAGAGATTTGAACTTTTCATTTGTGGTCGGGAGTTGGGCAATGCATTCTCCGAATTGACTGATCCTGTAGATCAGAGAGGACGTTTAGAAGATCAAGTTAGGCAGCATGAAAAGAAGAGAGCAGCTGTTTCAACAAATGATAAAAAGGATGGAATGGAAGATGAGGATGACTTGTATGAAGTGACTCTTGATGATGACTTTCTAACAGCTTTGGAGTATGGAATGCCTCCAGCTTCTGGAATGGGACTTGGAATCGATAGGCTCGTGATGCTTTTAACAAATTCTCCCAGTATTCGAGATGTTATCGCCTTCCCAGTACTCAAGGTCCAACAATAG 1749 0.4288 MEALKLCNLTWHPLKHFIYPHAFRRAPRTLVLRACSSSTAADTRAAGRNRRSSASSSPTSTSDRDAVRAIRLKKVEELRSKGLDPYAYEWHKTHGANQLQDIYRDLGNGEEKNSENDHISVAGRIVARRAFGKLVFLTLRDDSGTIQLYCDKERLIDDQFEQLKVHVDIGDILGARGTIKRTEKGELSVCVLSFAILTKSLLPLPDKYHGLTDIDKRYRQRYVDMIANPKVADVFRKRAKVVSEIRRTMDSLGFVEVETPVLQGAAGGAEARPFITYHNSLGRDLYLRIATELHLKRMLVGGFEKVYEIGRIFRNEGISTRHNPEFTTIEMYEAYSDYQSMMNLAEEIVTRCALAVHGKLSIDYQGVEICLERPWKRETMHNLVKETAGIDFNELGNDIEVAKGVTLDTLGKNLDNKDKGSIEACQSVGHLLNEVFEIFVEPKLIQPTFVLDYPIEISPLAKPHRRSTGLTERFELFICGRELGNAFSELTDPVDQRGRLEDQVRQHEKKRAAVSTNDKKDGMEDEDDLYEVTLDDDFLTALEYGMPPASGMGLGIDRLVMLLTNSPSIRDVIAFPVLKVQQ 582
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu2g0806 582 PANTHER LYSYL-TRNA SYNTHETASE 49 582 - -
Ssu2g0806 582 MobiDBLite consensus disorder prediction 41 65 - -
Ssu2g0806 582 Gene3D Bira Bifunctional Protein; Domain 2 209 582 IPR045864 -
Ssu2g0806 582 PRINTS Lysyl-tRNA synthetase signature 250 260 IPR018149 GO:0000166|GO:0004824|GO:0005524|GO:0005737|GO:0006430
Ssu2g0806 582 PRINTS Lysyl-tRNA synthetase signature 313 330 IPR018149 GO:0000166|GO:0004824|GO:0005524|GO:0005737|GO:0006430
Ssu2g0806 582 PRINTS Lysyl-tRNA synthetase signature 295 308 IPR018149 GO:0000166|GO:0004824|GO:0005524|GO:0005737|GO:0006430
Ssu2g0806 582 PRINTS Lysyl-tRNA synthetase signature 266 282 IPR018149 GO:0000166|GO:0004824|GO:0005524|GO:0005737|GO:0006430
Ssu2g0806 582 PRINTS Lysyl-tRNA synthetase signature 446 462 IPR018149 GO:0000166|GO:0004824|GO:0005524|GO:0005737|GO:0006430
Ssu2g0806 582 Hamap Lysine--tRNA ligase [lysS]. 70 581 IPR002313 GO:0004824|GO:0005524|GO:0006430
Ssu2g0806 582 Coils Coil 497 517 - -
Ssu2g0806 582 Pfam tRNA synthetases class II (D, K and N) 215 578 IPR004364 GO:0000166|GO:0004812|GO:0005524|GO:0006418
Ssu2g0806 582 MobiDBLite consensus disorder prediction 41 64 - -
Ssu2g0806 582 CDD LysRS_N 118 225 IPR044136 GO:0000166
Ssu2g0806 582 Pfam OB-fold nucleic acid binding domain 120 193 IPR004365 GO:0003676
Ssu2g0806 582 PANTHER LYSINE--TRNA LIGASE 49 582 - -
Ssu2g0806 582 Gene3D - 65 205 IPR012340 -
Ssu2g0806 582 SUPERFAMILY Class II aaRS and biotin synthetases 213 578 IPR045864 -
Ssu2g0806 582 ProSiteProfiles Aminoacyl-transfer RNA synthetases class-II family profile. 235 576 IPR006195 -
Ssu2g0806 582 TIGRFAM lysS_bact: lysine--tRNA ligase 69 580 IPR002313 GO:0004824|GO:0005524|GO:0006430
Ssu2g0806 582 SUPERFAMILY Nucleic acid-binding proteins 64 206 IPR012340 -
Ssu2g0806 582 CDD LysRS_core 228 579 IPR018149 GO:0000166|GO:0004824|GO:0005524|GO:0005737|GO:0006430
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu2g0806 Ssu-Chr2 41824659 41840422 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu2g0806 K04567 - gmx:100787720 1069.68