Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu2g0805 atGGCAGCATCAACAGAGAGTGCGAAAAAGCacgaagaggaagaggaagaggaacaaGTCATCACCCCATGGGAGGTTTCCGCCAAAGGCAAAATTGATTACGACAAACTCATCGATCGTTTCGGTTGCCAAAGGCTCGACGACGCTCTCATTTCCCGTCTCGAGCGTCTCACTTCTCGCACCGCTCACGTCTTCCTACGACGCGGCGTTTTCTTCGCCCACCGCGATTTCGCGGAGCTACTCGACGCCTACGAGAGGGGCGACAAGTTCTACTTGTACACCGGACGCGGACCTTCCTCCGAAGCGTTACATTTGGGCCATTTGATTCCCTTCATGTTCACTAAGTATTTGCAAGACGTGTTTAAGGTTCCTCTGGTTATACAGCTCACTGACGATGAGAAGTTCTTCTGGAAAAATCTTACTATAGAGGAGTGCCAAAGACTTGCAAGGGAGAATGCGAAGGACATCATTGCTTGTGGTTTTGACATTTCAAAGACATTTATCTTCTCTGATTTCAGTTATGTTGGCGGTTCCTTCTACAAGAACATGTCAGAGGTTGCAAAGCGTGTGACCTATAACCAGGCTGTTGGCATCTTTGGCTTCGCTGGGGAAGATCATATTGGAAAAGTTAGTTTTCCACCTGTGCAGGCCGTTCCATCATTTCCAAGTTCATTTCCTCACCTATTTTCTGGAAAAGAGAATCTCCGTTGTTTAATTCCTTGTGCAATTGACCAGGATCCATATTTTAGAATGACACGGGATGTTGCTCCTCGAATGGGTTTCCACAAGCCAGCCTTGATTGAATCATTATTCTTCCCTGCATTACAGGGGGAAACAGGAAAAATGTCTGCCAGTGATCCCAGTTCTGCTATATATGTGACTGATTCTGCCAAAGATATAAAGAACAAGGTAAACAAGTATGCATTTTCTGGTGGGCAAGATTCTATAGAGAAACATAGACAATTAGGGGCAAATCTTGAGGTAGATATACCAATCAAATACCTTACTTTCTTCCTAGAAGATGATGTTGAACTTGAACACATCAAGAAGGAATATGGAGAAGGGCGCATGCTAACTGGTGAGGTAAAGCAGCGGCTAAGTGAAGTTTTGACTGAAATAGTTGAGAGGCATCGTAGGGCTCGGGCTTCTGTGACTGAAGAGATGGTGGATGCATTTATGGCTGTCAGACCACTTCCCCACATGTTTGACTGA 1212 0.4439 MAASTESAKKHEEEEEEEQVITPWEVSAKGKIDYDKLIDRFGCQRLDDALISRLERLTSRTAHVFLRRGVFFAHRDFAELLDAYERGDKFYLYTGRGPSSEALHLGHLIPFMFTKYLQDVFKVPLVIQLTDDEKFFWKNLTIEECQRLARENAKDIIACGFDISKTFIFSDFSYVGGSFYKNMSEVAKRVTYNQAVGIFGFAGEDHIGKVSFPPVQAVPSFPSSFPHLFSGKENLRCLIPCAIDQDPYFRMTRDVAPRMGFHKPALIESLFFPALQGETGKMSASDPSSAIYVTDSAKDIKNKVNKYAFSGGQDSIEKHRQLGANLEVDIPIKYLTFFLEDDVELEHIKKEYGEGRMLTGEVKQRLSEVLTEIVERHRRARASVTEEMVDAFMAVRPLPHMFD 403
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu2g0805 403 Pfam tRNA synthetases class I (W and Y) 243 373 IPR002305 GO:0000166|GO:0004812|GO:0005524|GO:0006418
Ssu2g0805 403 ProSitePatterns Aminoacyl-transfer RNA synthetases class-I signature. 98 108 IPR001412 GO:0000166|GO:0004812|GO:0005524|GO:0006418
Ssu2g0805 403 CDD TrpRS_core 91 373 IPR002306 GO:0000166|GO:0004830|GO:0005524|GO:0006436
Ssu2g0805 403 SUPERFAMILY Nucleotidylyl transferase 19 396 - -
Ssu2g0805 403 MobiDBLite consensus disorder prediction 1 21 - -
Ssu2g0805 403 PANTHER TRYPTOPHANYL-TRNA SYNTHETASE 9 403 - -
Ssu2g0805 403 PRINTS Tryptophanyl-tRNA synthetase signature 237 258 IPR002306 GO:0000166|GO:0004830|GO:0005524|GO:0006436
Ssu2g0805 403 PRINTS Tryptophanyl-tRNA synthetase signature 155 174 IPR002306 GO:0000166|GO:0004830|GO:0005524|GO:0006436
Ssu2g0805 403 PRINTS Tryptophanyl-tRNA synthetase signature 103 119 IPR002306 GO:0000166|GO:0004830|GO:0005524|GO:0006436
Ssu2g0805 403 PRINTS Tryptophanyl-tRNA synthetase signature 281 291 IPR002306 GO:0000166|GO:0004830|GO:0005524|GO:0006436
Ssu2g0805 403 MobiDBLite consensus disorder prediction 1 17 - -
Ssu2g0805 403 Gene3D HUPs 7 284 IPR014729 -
Ssu2g0805 403 PANTHER BNAA01G33520D PROTEIN 9 403 - -
Ssu2g0805 403 TIGRFAM trpS: tryptophan--tRNA ligase 89 394 IPR002306 GO:0000166|GO:0004830|GO:0005524|GO:0006436
Ssu2g0805 403 Gene3D - 285 402 - -
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu2g0805 K01867 - gmx:100787194 753.436