Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu2g0793 ATGTATGGCGGTGATGAAGTATCAGCTATAGTAATTGACTTGGGTTCACACACGTCTAAAGCTGGTTATGCCGGTGAAGATGCTCCCAAGGCCGTGTTTCCTTCTGTTGTTGGAGCAATTGATCAAATGGATGTTGATGAAGCAGATAATGGTGAAAAGAACTCTGCCTCTGCTGCGGAATCAAAGAATAATGTTAGAAATGCTGATTCTGACAAGGTCAAGGGAAAGAGGAAATTGTTTGTAGGATCCCAGTCCTTGGGGTACCGTAGAGACCATATGGAGGTGCTGTCTCCGTTTAAAGATGGAATTGTTGCTGACTGGGATATTGTTGACAGCATATGGGATCATGCCTTCAGgGAGTGTCTACTGATTGATCCTAAAGAGCATCCTATGCTCCTTGCAGAGCCTTCTTCTAACTCTCAACAACAGAGAGAAAGgACAGCAGAGCTTATGTTTGAGAAGTACAAAGCACCTGCattatttttggcaaaaaatgCTGTTCTGACTTCTTTTGCATCTGGGCGTGCTACGTCATTAGTTGTTGATGGTGGTGGAGGATCAACTACAGTTGCACCAGTACATGACGGTTATGTTCTTCAAAAGGCTGTGGCAACCTCTCCAATTGGAGGAGAATTTCTTACAGATTGCTTGATGAAAAGCTTGGAAAGCAAGGGTATTACGATAAAACCGCGGTATTCCTTTAGGAGAAAGGAAATACGCCCAGGAGAGTTTCAGACTGTAGATCTTGATTTTCCAAATACAACTGAAAGCTACAAACTCTACTCCCAGAGGGTGATTGCTAGTGATATCAAGGACTGTGTGTGCCGTGCTCCAGATACTCCGTATGATGAGAGTGCATATTCAAACATCCCAATGACCTCATATGAGCTTCCTGATGGCCAGACAATTGAAATTGGAGCTGACAGATTTAAGATTCCAGATGTTCTTTTCAATCCGTCCCTGGTTCAGTCAATTCCTGGCATGGAGAGCTTTGCAGAAATTGCTCCTTCAGTTCGTGGCCTGCCCCAAATGGTCATTGAAAGCATTAATAAGTGTGACGTAGACATTCGAAGAGAATTGTTTAGTAGTATACTGCTTGCTGGTGGTACAGCTTCAATGCAACAACTAAAGGAACGCCTTGAGAAAGACTTGCTAGAGGAGTCCCCTCAAGCTGCGAGAGTAAAAGTATTGGCCAGTGGGAATGCTACTGAAAGAAGGTTTAGTGTTTGGATAGGGGGTAGTATATTGGCATCTCTCGGCTCCTTCCAGCAAATGTGGTTCTCCAAATCCGAGTATGAAGAGCATGGAGCTTCATATATCCAAAGGAAGTGTCCGTGA 1338 0.4342 MYGGDEVSAIVIDLGSHTSKAGYAGEDAPKAVFPSVVGAIDQMDVDEADNGEKNSASAAESKNNVRNADSDKVKGKRKLFVGSQSLGYRRDHMEVLSPFKDGIVADWDIVDSIWDHAFRECLLIDPKEHPMLLAEPSSNSQQQRERTAELMFEKYKAPALFLAKNAVLTSFASGRATSLVVDGGGGSTTVAPVHDGYVLQKAVATSPIGGEFLTDCLMKSLESKGITIKPRYSFRRKEIRPGEFQTVDLDFPNTTESYKLYSQRVIASDIKDCVCRAPDTPYDESAYSNIPMTSYELPDGQTIEIGADRFKIPDVLFNPSLVQSIPGMESFAEIAPSVRGLPQMVIESINKCDVDIRRELFSSILLAGGTASMQQLKERLEKDLLEESPQAARVKVLASGNATERRFSVWIGGSILASLGSFQQMWFSKSEYEEHGASYIQRKCP 445
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu2g0793 445 Pfam Actin 4 444 IPR004000 -
Ssu2g0793 445 Gene3D Actin; Chain A, domain 4 210 323 - -
Ssu2g0793 445 Gene3D - 1 180 - -
Ssu2g0793 445 CDD NBD_sugar-kinase_HSP70_actin 100 204 - -
Ssu2g0793 445 PANTHER ACTIN 2 444 IPR004000 -
Ssu2g0793 445 SMART actin_3 7 445 IPR004000 -
Ssu2g0793 445 MobiDBLite consensus disorder prediction 48 70 - -
Ssu2g0793 445 Gene3D - 390 445 - -
Ssu2g0793 445 PANTHER - 2 444 - -
Ssu2g0793 445 Gene3D - 181 384 - -
Ssu2g0793 445 SUPERFAMILY Actin-like ATPase domain 5 181 IPR043129 -
Ssu2g0793 445 SUPERFAMILY Actin-like ATPase domain 174 444 IPR043129 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu2g0793 Ssu-Chr2 41360730 41372569 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu2g0793 1 444 Miscellaneous Gene Families AT3G53750 36.018 6.47e-93 284
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu2g0793 K11340 - gmx:100785066 854.744