Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu2g0760 ATGGTCGTGATGTATCAGTGGAGGAAGTTCGAGTTCTTCGAGGAAAAATACGGCGCGAAATGCGCAATTCCCGAGGGTGACGACGACGTCGTCGACAGGAAGATCGAGTGCTGTTCGAGCGGGAGGGGCAAAGTGGTCACCGGCTTCGAAGACGGCGTCGTTTGCTTCTTCGACCGGGGCTTCAAGTTCAATTACGCTTTTCAACCTCACTCCTCCTCCGTTCTCTTTCTTCAGCAGCTCAAGCAACGCAACTTTCTAGTAACAATTGGGGAGGATGAGCAGCTTACTCCTCATCAATCAGCTTTGTGCCTCAAGGTTTTTGACCTTGACAAGATGCAACCGGAGGGTTCGAGCACGACGAGTCCTGATTGTGTTGGGATATTGCGGATATTCACTAATCAGTTTCCTGAGGCAAAGATTACATCCTTTTTAGTGTTGGAAGAAGTGCCGCCTATACTACTCATAGCTATTGGATTGGACAATGGTTCTATTTACTGCATCAAAGGAGACATTGCGCGGGAGCGTATCACCCGTTTCAAGCTTCAAGTGGAAAACAACCATTCGGACAAAACTCTTTCTGCCATAACTGGACTTGGGTTTAGGGTGGATGGTCAATCTCTACAGTTATTTGCTGTGACTCCAAGTTCAGTGAGCTTGTTTTCGTTGCATGATCAACCGCCAAAAGGGCAGACCCTTGATCAGATTGGATGTGGTGTGAACAGTGTTGCAATGAGTGATCGCTCTGAGTTGATAATTGGTCGACCAGAGGCAgtatatttttatgaagttgATGGACGTGGTccttgttgggcttttgagggagAGAAGAAATTGCTTGGATGGTTTCGTGGATACCTTTTGTGTGTTATTGCAGATCAAAGAACAGGAAAGCATACTTTCAACATCTATGACCTGAAGAATCGATTAATAGCCCACAGTGCATTGGTTAAAGAAGTGTCTCATATGCTCTATGAATGGGGTAACATCATACTCATAATGAATGACAAATCAGCTTTATGTATTGGAGAAAAGGATATGGAAAGCAAGTTAGACATGTTATTCAAGAAAAACCTATATACTGTAGCAATTAATCTTGTACAGACTCAGCAAGCTGATGCTGCAGCGACTGCTGAAGTGCTAAGGAAATATGGGGATCATCTATATAGCAAGCAAGACTATGATGAAGCAATGGCCCAGTACATACACACTATTGGTCACCTTGAACCTTCTTATGTTATACAGAAGTTTTTGGATGCTCAAAGAATCTACAACCTCACAAATTACTTGGAAAAGCTACATGAGAAGGGTCTTGCTTCTAAAGATCACACCACACTTCTGTTAAACTGTTACACCAAATTGAAAGATGTTGAAAAGttaaatctatttattaaaagtgaTGACAGCATTGGAGAACTTAAATTTGATGTGGAAACAGCAATCAGGGTTTGCCGTGCTGCCAATTACCACGAGCATGCAATGTATGTTGCAAAGAAGGCAGGGAGGCATGAATGGTACTTGAAGATCTTGCTTGAAGATCTTGGTAGATATGAAGAGGCCTTGGATTATATTTCAAGCCTTGAATCAAGTCAGGCAGGGATGACAATAAAGGAGTATGGTAAGATTCTGATAGAGCACAAGCCAGAGGAGACAATTGAGATTCTCATAAGGCTTTGCACTGAGGATGGTGACAAAAGAGGACTCTCAAATGGAGTGTATATGTCTATGTTGCCATCTCCTGTAGATTTTCTTAGCATTTTCATTCATCATCCCCAGTCCCTTATGGATTTTCTAGAAAAATATACCAATAAGGTCAAGGACTCACCTGCTCAAGTTGAGATTCACAATACCCTCTTAGAGTTGTATATATCCAATGAATTGAACTTTCCTTCAATGTCACAAGTTAATGGCGGTGGAAATTACCTTAATGGAGTATCAGCAAAAACTATGATTTCAAGTACTCAGTCCAATGGAAACATTGCTGATCACAACAGTTCAGAACAGGAAAAGGACCGTCTCAAAAGGCGTGAAAAGGGTCTTCACTTGCTTAAGAGTGCATGGCCTCCAGAGACAGAACATCCACTATATGATGTTGATTTAGCTATTATACTATGTGAAATGAATGCATTCAAAGATGGGCTTTTGTATTTGTATGAAAAGATGAAACTCTATAAAGAAGTGGTTGCTTGCTATATGCAGGCACATGACCATGAGGGGTTAATTGCATGCTGCAAAAAGCTGGGGGATTCAGTTAAAGGAGGGGACCCATCTCTTTGGGCAGATCTACTTAAATATTTTGGTGAGCTTGGAGAAGATTGTTCTAAAGAAGTAAAAGAAGTTCTGACTTATATTGAGAGGGATGATATTTTGCCCCCTATAATTGTGCTTCAAACTCTTTCCCGAAACCCATGCCTCACACTTTCTGTGATCAAGGATTACATTGCTCGAAAGCTTGAGCGGGAATCAAAGATGATTGAGGAGGACCGACAAGCTATTGAGAAATATCAGGAAGATACATTGACAATGAGAAAAGAGATTCAAGATCTTAGGACAAATGCTAGAATTTttcagcttagcaagtgcactGCATGCACCTTCACCCTTGATCTGCCTGCTGTGCACTTCATGTGCATGCACTCATTCCATTTGCGCTGCCTTGGcgataatgaaaaagaatgcCCTGAGTGTGCTCCTGAATATAGGTCTGTcttagaaatgaaaagaaatttagAGCAAAATTCTAAGGATCAGGACAGGTTTTTTCAGCAGGTGAAGAGCTCTAAAGATGGGTTTTCGGTAATTGCTGAATATTTTGGAAAAGGGATCATCAGCAAAATAAATACTGGATCCACTTCTGGTCCCAGATCTGGAACTGCATCATCCACTAGTGGTTTCTAA 2895 0.4024 MVVMYQWRKFEFFEEKYGAKCAIPEGDDDVVDRKIECCSSGRGKVVTGFEDGVVCFFDRGFKFNYAFQPHSSSVLFLQQLKQRNFLVTIGEDEQLTPHQSALCLKVFDLDKMQPEGSSTTSPDCVGILRIFTNQFPEAKITSFLVLEEVPPILLIAIGLDNGSIYCIKGDIARERITRFKLQVENNHSDKTLSAITGLGFRVDGQSLQLFAVTPSSVSLFSLHDQPPKGQTLDQIGCGVNSVAMSDRSELIIGRPEAVYFYEVDGRGPCWAFEGEKKLLGWFRGYLLCVIADQRTGKHTFNIYDLKNRLIAHSALVKEVSHMLYEWGNIILIMNDKSALCIGEKDMESKLDMLFKKNLYTVAINLVQTQQADAAATAEVLRKYGDHLYSKQDYDEAMAQYIHTIGHLEPSYVIQKFLDAQRIYNLTNYLEKLHEKGLASKDHTTLLLNCYTKLKDVEKLNLFIKSDDSIGELKFDVETAIRVCRAANYHEHAMYVAKKAGRHEWYLKILLEDLGRYEEALDYISSLESSQAGMTIKEYGKILIEHKPEETIEILIRLCTEDGDKRGLSNGVYMSMLPSPVDFLSIFIHHPQSLMDFLEKYTNKVKDSPAQVEIHNTLLELYISNELNFPSMSQVNGGGNYLNGVSAKTMISSTQSNGNIADHNSSEQEKDRLKRREKGLHLLKSAWPPETEHPLYDVDLAIILCEMNAFKDGLLYLYEKMKLYKEVVACYMQAHDHEGLIACCKKLGDSVKGGDPSLWADLLKYFGELGEDCSKEVKEVLTYIERDDILPPIIVLQTLSRNPCLTLSVIKDYIARKLERESKMIEEDRQAIEKYQEDTLTMRKEIQDLRTNARIFQLSKCTACTFTLDLPAVHFMCMHSFHLRCLGDNEKECPECAPEYRSVLEMKRNLEQNSKDQDRFFQQVKSSKDGFSVIAEYFGKGIISKINTGSTSGPRSGTASSTSGF 964
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu2g0760 964 SUPERFAMILY RING/U-box 838 900 - -
Ssu2g0760 964 ProSiteProfiles Clathrin heavy-chain (CHCR) repeat profile. 567 774 IPR000547 GO:0006886|GO:0016192
Ssu2g0760 964 PANTHER VACUOLAR PROTEIN SORTING-ASSOCIATED PROTEIN 6 943 - -
Ssu2g0760 964 Pfam Region in Clathrin and VPS 408 531 IPR000547 GO:0006886|GO:0016192
Ssu2g0760 964 PANTHER VACUOLAR PROTEIN SORTING-ASSOCIATED PROTEIN 11 HOMOLOG 6 943 IPR016528 -
Ssu2g0760 964 PIRSF Vps11 2 574 IPR016528 -
Ssu2g0760 964 PIRSF Vps11 572 950 IPR016528 -
Ssu2g0760 964 Coils Coil 814 851 - -
Ssu2g0760 964 Pfam Vacuolar protein sorting protein 11 C terminal 900 942 IPR024763 -
Ssu2g0760 964 ProSiteProfiles Clathrin heavy-chain (CHCR) repeat profile. 400 551 IPR000547 GO:0006886|GO:0016192
Ssu2g0760 964 ProSiteProfiles Zinc finger RING-type profile. 860 895 IPR001841 -
Ssu2g0760 964 Gene3D Tetratricopeptide repeat domain 334 634 IPR011990 GO:0005515
Ssu2g0760 964 Gene3D - 32 314 IPR015943 GO:0005515
Ssu2g0760 964 CDD RING-H2_Vps11 858 898 - -
Ssu2g0760 964 SUPERFAMILY WD40 repeat-like 37 256 IPR036322 GO:0005515
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu2g0760 K20179 - gmx:100793279 1835.46