Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu2g0739 ATGCCTCTGGAGGACTTATACAAGATATTTGGTGAAACAAAGCTCAAAAGTCTGGTTTGGACTGCATGGCAACCATTAGAATCACCATGCTTGTTGGAGCATGTAATTTTACCTGTGGAGCTTGGGTTCTTTGTGATCTTGTTAGTCCAACTCCTAAGAAAATATGTGAACCTGATCAGCAAGCAAACCAAGGTCCCAGATGGTGCCACAGAGATGATGCATCGAACTGCAATCAAATTTGGTTTTGCCTACAAAGTCAGCATTGTTTGCACCACATTATTGTTGGCTGTTCATGCATCACTGCTATTACTGATGCTCAATCATGAGACTCAATGCACCTCAACACTTCAGGCCTTCACATCAGAGATAGTTCAAGTGTTATCATGGGCAATTAGTCTTATAGCAATGTGCAAGATATCAAAATCAAACACTTATTTCCCTTGGATTCTAAGGGCTTGGTGGCTTTGCagtttcattttttgtattataaccACAGCCCTTCATGTCCATTTCAGTGTCACCAACCAGGGTCAGATTAGTTTAAGAGAATGTGCAGATTTCCTTGGTTTGCTTGCTTCAACATGCCTTTTGGTTATTTCCACAAGAGGGAAGACAGGCACTGTCTTGCTTGCCACAAATGGTGCATCTGAACCACTTCTTGGAGAGAAAGCTGAGAAACATTCAGAGTGTCAAAGGGAATCTCCATACGGAAAAGCCACTCTTCTCCAACTCATTAACTTCTCATGGCTCAACCCCTTGTTTGCAATAGGGTATAAGAAACCCCTTGAACAGAATGACATTCCTGATGTTGACATCAAGGACTCTGCTGAGTTTCTAACCTGCTCCTTTGATGAGAGCCTTAGGAAAGTTAAAGAGAGTGATGGCACTGCAAATCCATCTATCTACAAGGCAATCTACTTATTTGCTAGGAAGAAAGCAGCAATCAATGCATTGTTTGCAGTAGCGAATGCTTCAGCATCATATGTTGGTCCATACTTGATAACTGACTTTGTGGATTTCCTAGGAGAAAAGGAAATGCGCGGCTTGAAGAGTGGATACCTCCTGTCACTAGCTTTTCTATGTGCCAAAATGGTTGAGACCATAGCTCAGAGGCAATGGATTTTTGGTGCCAGGCAATTAGGCCTTCGCCTTAGAGCAGCGTTGATATCACATATATATCAGAAGGGCCTACATCTCTCGAGTAGATCACGTCAAAGTCACACGGGTGGCGAGATAATGAACTACTTGAGTGTAGATGTGCAGAGAATCACAGATTTTGTTTGGTATGTAAATGTAATATGGATGCTGCCCATACAAATTTCTTTAGCAGTGTTCATTTTGCATACAAATCTAGGACTAGGTTCATTGGCTGCATTAGCTGCTACATTGGCAGTGATGACTTTGAACATACCTCTAACAAAGATACAGAAAAGATACCAAGCCAAGATCATGGAGGCCAAGGACAACAGGATGAAAGCCACTTCAGAAGTTCTCAGAAACATGAGGACTTTGAAACTTCAAGCATGGGACAGTCAATTTTCTCAAAGGATAGAAGCACTTAGGAATATAGAGTACAATTGGTTAATGAAGTCATTGAGGCAAGCTGCATTTACCGCTTTCATCTTTTGGGGATCACCTACATTCATTTCTGTGATAACTTTTTGGGCATGCATGTTCATGGGGATTGAACTGACAGCAGGAAGGGTCTTATCAGCATTCGCCACATTCCGAATGTTGCAGGATCCTATATTTAGCCTACCTGATTTGCTCAATGTCATTGCTCAAGGAAAAGTTTCAGTTGATCGGATCGCTTCCTTCCTCCGCGAGGAAGAAATCCAGCATGATGTCATTGAATATGTTGCAAAGGACAAAACAGAATTTGACATAGTTATTGAGAGAGGGAGATTCAGCTGGGATCCTGAGTCAACAACTCCAACCATTGATGAAATAGAGTTGAAAGTTAAGAGGGGAATGAAGGTTGCAATTTGTGGATCTGTAGGTTCAGGAAAGTCTAGCCTGCTATCAGGCATTTTGGGAGAAATATATAAACAGTCTGGGACAGTCAAGATTAGTGGAACAAAAGCTTATGTTCCACAATCAGCATGGATACTGACTGGAAACATCAGGGACAACATTACCTTTGGAAGAGAGTACAATGCTGATAAGTATGAGAAAACTATTGAGGCATGTGCATTGAAAAAGGACTTTGAGCTATTCTCGTGTGGCGACATGACAGAGATTGGAGAAAGAGGGATTAATATGAGTGGGGGACAGAAGCAAAGGATACAAATAGCTAGAGCAGTTTACCAAGATTCTGACATATACCTTTTTGATGACCCTTTCAGTGCTGTTGATGCTCATACTGGCACTCAACTCTTTAAGGAGTGCCTTATGGGGATCCTCAAAGAGAAAACTATAATATTTGTTACACACCAAGTTGAGTTTCTTCCAGCAGCAGACCTCATTCTGGTGATGCAAAATGGAAGGATAGCACAAGCTGGAAAATTTGAAGATCTTCTAAAGCAAAATATAGGATTTGAAGTTCTAGTTGGTGCTCACAGCAAAGCTCTACAGTCAATTCTTGTGGCTGAAAATTCCAGTAGaacaaatttaaatccaataGCTGAAGAAGGAGAATCCAACTTCAACTCCAAATCAAATCTTCAACTTGTGCACCCACAGCTTGACACAGTGCAAGACAATCCTCCAGAGGGCAAAGGAAATGATGGAAAGTTGGTGCaagaagaggaaagagaaaCAGGAAGCATAGCAAAAGAAGTTTACTGGGCTTATTTGACCACTGTCAAAGGGGGACTCTTTGTTCCTCTCATACTCTTGGCACAGTCTTCATTCCAAATACTTCAAATTGCCAGTAACTATTGGATGGCTTGGGTTTGTCCCACAAGTAGTGATGCTAAGCCTATATTTGACATGAATTTCATACTACTTATTTATATGGCACTCTCAGTTGCTGGTTCATTGTGTGTTTTGCTGCGAGCCATGATGGTGTTAAATGCTGGACTTTGGACAGCACAAACACTTTTCACAAAGATGTTGCATAGTGTGCTCCGAGCCCCCATGGCATTTTTTGATTCTACACCAACTGGAAGAATCTTGAACAGGGCTTCCACAGATCAAAGTGTGCTAGACTTGGAAATGGCAAACAAAATAGGATGGTGTGCTTTCTCAATAATACAGATTCTGGGCACTATTGCAGTGATGTGTCAGGTGGCATGGCAAGTATTTGCCATCTTCATTCCAGTAACTGCAGTCTGCATATGGTATCAAAGATATTATACTCCAACAGCAAGAGAACTGGCTCGCTTAGCACAGATACAAATTACTCCAATTCTCCACCACTTTTCAGAGTCTTTAGCAGGAGCAGCATCAATACGAGCTTTTGATCAAGAGGGCCGTTTCATATACACAAATCTTCTCCTTGTGGATGGCTTCTCAAGGCCATGGTTTCATAATGTGTCTGCAATGGAATGGCTTTCTTTCAGATTgaatttactttcaaattttgtttttgccttCTCGCTGGTCATGTTAGTGAGCCTCCCTGAAGGAATAATCAACCCAAGTATTGCCGGGTTGGCAGTTACATATGGGATCAATCTGAATGTGTTGCAAGCTTCAGTTATATGGAACATATGCAACGCAGAAAACAAGATGATATCAGTTGAAAGAATTCTTCAATATACAAATATAGAAAGTGAAGCACCTCTTGTGATTGAAGACTGCAGGCCACCAAGCAACTGGCCAGAAACAGGAACAATAAGTTTCACAAATTTGCAGATACGTTATGCCGAACATCTGCCATCTGTGTTGAAAAACATCACCTGCACATTTCCTGGCAGGAAGAAAATTGGTGTTGTAGGGCGTACCGGGAGTGGAAAATCAACTCTCATACAGGCCATTTTCAGGATTGTTGAACCAAGAGAAGGAAGCATTATAATTGACAATGTGGACATACGCAAGATAGGTCTCCATGACTTAAGGTCAAGGCTTAGCATTATCCCACAAGACCCTGCCTTATTTGAAGGCACTGTTAGAGGAAACCTGGACCCACTGCAGCAATACTCTGACATTGAAGTGTGGGaggCTCTAGACAAATGTCAGCTAGGTCACCTAGTGAGGCCCAAGGAAGAGAAGTTGGATTCCCTAGTGGTTGAAAATGGTGATAACTGGAGTGTGGGCCAAAGGCAATTATTTTGCCTTGGAAGAGCCCTGCTGAAAAGAAGCAGCATATTAGTACTAGATGAAGCAACAGCCTCTGTGGATTCTGCAACTGATGGGGTGATACAAAACATCATAAGCCAAGAGTTCAAAGAAAGGACTGTTGTCACAATAGCTCACAGAATCCACACAGTTATTGATAGCGATTTGATTTTAGTGCTCAGTGATGGGAGAATTGCTGAGTATGATGAACCATCAAAATTACTTGAGAGAGAAGATTCCTTCTTCTTTAAACTTATAAAGGAGTATTCTGGAAGATCACATAACTTCAACAGCTTGGCAACTCAACATGTCCAAAGCAGGGAACAATTATGA 4554 0.41 MPLEDLYKIFGETKLKSLVWTAWQPLESPCLLEHVILPVELGFFVILLVQLLRKYVNLISKQTKVPDGATEMMHRTAIKFGFAYKVSIVCTTLLLAVHASLLLLMLNHETQCTSTLQAFTSEIVQVLSWAISLIAMCKISKSNTYFPWILRAWWLCSFIFCIITTALHVHFSVTNQGQISLRECADFLGLLASTCLLVISTRGKTGTVLLATNGASEPLLGEKAEKHSECQRESPYGKATLLQLINFSWLNPLFAIGYKKPLEQNDIPDVDIKDSAEFLTCSFDESLRKVKESDGTANPSIYKAIYLFARKKAAINALFAVANASASYVGPYLITDFVDFLGEKEMRGLKSGYLLSLAFLCAKMVETIAQRQWIFGARQLGLRLRAALISHIYQKGLHLSSRSRQSHTGGEIMNYLSVDVQRITDFVWYVNVIWMLPIQISLAVFILHTNLGLGSLAALAATLAVMTLNIPLTKIQKRYQAKIMEAKDNRMKATSEVLRNMRTLKLQAWDSQFSQRIEALRNIEYNWLMKSLRQAAFTAFIFWGSPTFISVITFWACMFMGIELTAGRVLSAFATFRMLQDPIFSLPDLLNVIAQGKVSVDRIASFLREEEIQHDVIEYVAKDKTEFDIVIERGRFSWDPESTTPTIDEIELKVKRGMKVAICGSVGSGKSSLLSGILGEIYKQSGTVKISGTKAYVPQSAWILTGNIRDNITFGREYNADKYEKTIEACALKKDFELFSCGDMTEIGERGINMSGGQKQRIQIARAVYQDSDIYLFDDPFSAVDAHTGTQLFKECLMGILKEKTIIFVTHQVEFLPAADLILVMQNGRIAQAGKFEDLLKQNIGFEVLVGAHSKALQSILVAENSSRTNLNPIAEEGESNFNSKSNLQLVHPQLDTVQDNPPEGKGNDGKLVQEEERETGSIAKEVYWAYLTTVKGGLFVPLILLAQSSFQILQIASNYWMAWVCPTSSDAKPIFDMNFILLIYMALSVAGSLCVLLRAMMVLNAGLWTAQTLFTKMLHSVLRAPMAFFDSTPTGRILNRASTDQSVLDLEMANKIGWCAFSIIQILGTIAVMCQVAWQVFAIFIPVTAVCIWYQRYYTPTARELARLAQIQITPILHHFSESLAGAASIRAFDQEGRFIYTNLLLVDGFSRPWFHNVSAMEWLSFRLNLLSNFVFAFSLVMLVSLPEGIINPSIAGLAVTYGINLNVLQASVIWNICNAENKMISVERILQYTNIESEAPLVIEDCRPPSNWPETGTISFTNLQIRYAEHLPSVLKNITCTFPGRKKIGVVGRTGSGKSTLIQAIFRIVEPREGSIIIDNVDIRKIGLHDLRSRLSIIPQDPALFEGTVRGNLDPLQQYSDIEVWEALDKCQLGHLVRPKEEKLDSLVVENGDNWSVGQRQLFCLGRALLKRSSILVLDEATASVDSATDGVIQNIISQEFKERTVVTIAHRIHTVIDSDLILVLSDGRIAEYDEPSKLLEREDSFFFKLIKEYSGRSHNFNSLATQHVQSREQL 1517
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu2g0739 1517 CDD ABC_6TM_ABCC_D2 941 1235 IPR044726 GO:0140359
Ssu2g0739 1517 Pfam ABC transporter 648 781 IPR003439 GO:0005524
Ssu2g0739 1517 Gene3D ABC transporter type 1, transmembrane domain 288 615 IPR036640 GO:0005524|GO:0016021
Ssu2g0739 1517 MobiDBLite consensus disorder prediction 896 917 - -
Ssu2g0739 1517 CDD ABC_6TM_ABCC_D1 315 603 IPR044746 GO:0140359
Ssu2g0739 1517 Coils Coil 476 496 - -
Ssu2g0739 1517 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 1260 1494 IPR003439 GO:0005524
Ssu2g0739 1517 PANTHER ATP-BINDING CASSETTE SUB-FAMILY C 112 1503 - -
Ssu2g0739 1517 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 314 595 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Ssu2g0739 1517 Gene3D - 1243 1495 IPR027417 -
Ssu2g0739 1517 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 625 852 IPR003439 GO:0005524
Ssu2g0739 1517 PANTHER - 112 1503 - -
Ssu2g0739 1517 Gene3D - 627 858 IPR027417 -
Ssu2g0739 1517 SMART AAA_5 656 829 IPR003593 -
Ssu2g0739 1517 SMART AAA_5 1286 1478 IPR003593 -
Ssu2g0739 1517 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 1252 1488 IPR027417 -
Ssu2g0739 1517 CDD ABCC_MRP_domain2 1258 1478 - -
Ssu2g0739 1517 Pfam ABC transporter 1277 1425 IPR003439 GO:0005524
Ssu2g0739 1517 SUPERFAMILY ABC transporter transmembrane region 929 1240 IPR036640 GO:0005524|GO:0016021
Ssu2g0739 1517 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 624 845 IPR027417 -
Ssu2g0739 1517 Pfam ABC transporter transmembrane region 953 1187 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Ssu2g0739 1517 Pfam ABC transporter transmembrane region 315 578 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Ssu2g0739 1517 ProSitePatterns ABC transporters family signature. 754 768 IPR017871 GO:0005524
Ssu2g0739 1517 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 943 1223 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Ssu2g0739 1517 SUPERFAMILY ABC transporter transmembrane region 310 611 IPR036640 GO:0005524|GO:0016021
Ssu2g0739 1517 CDD ABCC_MRP_domain1 629 829 - -
Ssu2g0739 1517 Gene3D ABC transporter type 1, transmembrane domain 906 1241 IPR036640 GO:0005524|GO:0016021
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu2g0739 Ssu-Chr2 39660900 39672944 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu2g0739 636 887 Calmodulin-binding Proteins AT2G36910 28.996 2.17e-21 99.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu2g0739 - - gmx:100809749 2767.64