Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu2g0738 ATGTCCACTCTGCTTCACTCCGCTCCCGCTTCCTCTCCTTCCTTCTCTCAGATCACCGCTCCTCGTTTCGCTCCTTCCCCTCGCATCTCACTCCGAAACGGCGTCAGGTGCGGGGCGATAGAGGCAGTGAAGTTGGAGAATGGGAGGCCAAGTGCGAGCGAGTTTGTAGTTGGTGGCGCAAGTGGAAACGCGATTCCGAGTTTCGTCGTGGCGCCAAACGCGCGTATTCAGGATTTGGTTAACCGGAACAACACTCGGCTTCGGCTATTTTCCGGCACCTGCCAATCCGGCGCTTGCTCAGgaaaaattaagataaagcGCTTTGCTGATGGTGAGATATATGTTCAGTTGCAAGAAAGTGTCAGGGGGTGTGATGTGTTTCTTGTGCAGCCCACATGTCCTCCTGCGAATGAGAATCTTATGGAGCTTCTCATAATGATTGATGCCTGCAGGAGGGCTTCAGCCAAAAATATTACTGCTGTCATTCCATATTTTGGATATGCCAGAGCTGATAGAAAGACTCAAGGGCGTGAATCCATTGCTGCCAAGCTTGTAGCAAATTTAATTACAGAAGCAGGTGCAAATCGTGTACTTGCTTGTGACCTCCATTCTGGGCAGTCCATGGGCTATTTTGATATTCCAGTTGATCATGTGTATGGACAGCCTGTTATTCTTGATTACCTTGCCAGTAAGACTATTTGTTCAGACGATTTGGTAGTTGTCTCGCCAGATGTTGGTGGTGTTGCCAGAGCACGTGCTTTTGCCAAAAAATTGTCTGATGCTCCTTTAGCTATTGTTGATAAAAGGCGCCATGGGCATAATGTTGCTGAGGTGATGAATTTGATAGGTGATGTAAAGGGAAAGGTAGCAGTTATGGTAGATGACATGATTGATACTGCTGGGACTATTGCCAAAGGTGCAGCTCTGTTGCATCAAGAAGGGGCAAGAGAAGTCTATGCATGCTCTACTCATGCTGTTTTCAGTCCTCCTGCTATTGAGAGGTTGTCAGGCGGTTTGTTCCAAGAAGTTATCATAACTAATACAATTCCAGTGGCAGAGCAGAACTATTTCCCCCAGTTAACTGTCCTATCGGTGGCAAACCTTCTGGGCGAGACTGTATGGCGTGTTCATGATGATTGCTCAataatttag 1152 0.4679 MSTLLHSAPASSPSFSQITAPRFAPSPRISLRNGVRCGAIEAVKLENGRPSASEFVVGGASGNAIPSFVVAPNARIQDLVNRNNTRLRLFSGTCQSGACSGKIKIKRFADGEIYVQLQESVRGCDVFLVQPTCPPANENLMELLIMIDACRRASAKNITAVIPYFGYARADRKTQGRESIAAKLVANLITEAGANRVLACDLHSGQSMGYFDIPVDHVYGQPVILDYLASKTICSDDLVVVSPDVGGVARARAFAKKLSDAPLAIVDKRRHGHNVAEVMNLIGDVKGKVAVMVDDMIDTAGTIAKGAALLHQEGAREVYACSTHAVFSPPAIERLSGGLFQEVIITNTIPVAEQNYFPQLTVLSVANLLGETVWRVHDDCSII 383
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu2g0738 383 Pfam Phosphoribosyl synthetase-associated domain 278 381 IPR005946 GO:0000287|GO:0004749|GO:0009165
Ssu2g0738 383 ProSitePatterns Phosphoribosyl pyrophosphate synthase signature. 201 216 IPR000842 GO:0000287|GO:0004749|GO:0009156|GO:0044249
Ssu2g0738 383 SUPERFAMILY PRTase-like 142 378 IPR029057 -
Ssu2g0738 383 TIGRFAM ribP_PPkin: ribose-phosphate diphosphokinase 100 382 IPR005946 GO:0000287|GO:0004749|GO:0009165
Ssu2g0738 383 CDD PRTases_typeI 236 348 IPR000836 -
Ssu2g0738 383 Hamap Putative ribose-phosphate pyrophosphokinase [prs]. 77 383 IPR037515 GO:0004749
Ssu2g0738 383 Gene3D - 98 378 IPR029057 -
Ssu2g0738 383 SMART Pribosyltran_N_2 87 193 - -
Ssu2g0738 383 Gene3D - 220 363 IPR029057 -
Ssu2g0738 383 Pfam N-terminal domain of ribose phosphate pyrophosphokinase 100 193 IPR029099 -
Ssu2g0738 383 PANTHER RIBOSE-PHOSPHATE PYROPHOSPHOKINASE 2, CHLOROPLASTIC 47 382 - -
Ssu2g0738 383 PANTHER RIBOSE-PHOSPHATE DIPHOSPHOKINASE FAMILY MEMBER 47 382 IPR005946 GO:0000287|GO:0004749|GO:0009165
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu2g0738 Ssu-Chr2 39646137 39659688 Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu2g0738 K00948 - gmx:100816430 689.108