Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu2g0720 ATGGCACAAATAGTTTTGCATGCTTTGGTACTCTTTTTATTCACATTTAGATCAGCCATAGCTGAAGGGTTAACTTTCAATGTTGTCAGTTTTGGGGCCAAGCCAGATGGTGAAACTGACTCCACTAATGCATTCCTCAGTGCATGGGGTAGAGCATGCAGCTCAACAACACCAACCACCATTTATGTGCCCTTAGGAAGGTTCTTAGTTGGTAATGCAGTGTTTAAGGGGCGGTGCAACAAGAAGGGCATCACAATACGCATTGATGGTGCACTGGTTGCACCTTCCAACTATGATGTTATTGGAAATGCTGGAAATTGGTTGTTTTTCGATGATGTTATGGGGTTTCGGTCATTGGTGGTGTTCTTGATGGACAAGGCACAGGCCTGTGGGCATAACTTGGGATTTACCAATTCCAACAACGTTGTTATCAACGGAGTGACCTCTCTGAACAGCCAAATGTTCCATATAGTTATTGACCGATGTGAAAATGTGAAAGTACAAGGTGTTAAGGTATCAGCTGCAGGAAACAGTCCTAACACTGATGGCATTCACGTTCAACTCTCATCAAGTGTCACCATTCTCAACTCCAACATACCAACCAGAGATGACTGCATCTCAATTGGTCCTGGAACTACTAATTTGTGGATAGAAAACATAGCTTGCGGACCAGGTCACGGAATCAGTGTTGGAAGTTTAGGCAAGGAATTTCAAGAACCTGATGTGCAAAATGTGACAGTTAAAACAGTCACATTTACAGGGACTGAAAATGGTGTACGAATTAAGTCTTGGGGAAGACCTAGCAGTGGATTTGCTAGGAACATTCTTTTCCAACATGCTACCATGGTTAATGTCCAAAACCCAATTGTGATCGACCAAAGTTATTGCCCTAATGAGAAGAATTGTCCGGGTCAGGTTTCTGGGGTTGAATAG 933 0.4298 MAQIVLHALVLFLFTFRSAIAEGLTFNVVSFGAKPDGETDSTNAFLSAWGRACSSTTPTTIYVPLGRFLVGNAVFKGRCNKKGITIRIDGALVAPSNYDVIGNAGNWLFFDDVMGFRSLVVFLMDKAQACGHNLGFTNSNNVVINGVTSLNSQMFHIVIDRCENVKVQGVKVSAAGNSPNTDGIHVQLSSSVTILNSNIPTRDDCISIGPGTTNLWIENIACGPGHGISVGSLGKEFQEPDVQNVTVKTVTFTGTENGVRIKSWGRPSSGFARNILFQHATMVNVQNPIVIDQSYCPNEKNCPGQVSGVE 310
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu2g0720 310 Pfam Glycosyl hydrolases family 28 132 309 IPR000743 GO:0004650|GO:0005975
Ssu2g0720 310 PANTHER - 2 310 - -
Ssu2g0720 310 SMART pbh1 212 232 IPR006626 -
Ssu2g0720 310 SMART pbh1 162 188 IPR006626 -
Ssu2g0720 310 SMART pbh1 242 263 IPR006626 -
Ssu2g0720 310 SMART pbh1 272 293 IPR006626 -
Ssu2g0720 310 ProSitePatterns Polygalacturonase active site. 219 232 IPR000743 GO:0004650|GO:0005975
Ssu2g0720 310 PANTHER PECTIN LYASE SUPERFAMILY PROTEIN 2 310 - -
Ssu2g0720 310 Gene3D - 15 310 IPR012334 -
Ssu2g0720 310 SUPERFAMILY Pectin lyase-like 9 306 IPR011050 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu2g0720 Ssu-Chr2 38991426 38995377 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu2g0720 9 310 Glycoside Hydrolase AT2G43870 60.127 3.24e-129 371
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu2g0720 K01184 - gmx:100784002 536.184