Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu2g0719 atGATTTTGAAAAGTATGAAATCTGGGGAAATTGGAGTTTCATGCCGTAAGGAGTGGAGGAAAAGGCAAATAAGGAAGATAACAGATCAAGTTTTTGACAAAGTAAAGAATCAAGTGCAGACTGATCATTTGAGTTTTGTAGATCTGTATATTGCTGTTTTACTTGTGTACAATGGTATCAACAAGTATGTTACTGGTCCCCATTTTGATCCTCCATCAAAAGACAGAGTCAGAGAAGTCATCAAGAACTGTGATGTTGACATGGATGGGCAAATTAATCGTGACGAATTTTTTGGTTTCATCCAGCAAATGGCACCTGAAACATTCCATGTTGTTCGTAAAAAACTTGTTGCCACTTTGGTTGTAGCACCAACAGTTGCAGTGTCAACAAAGAAAGCTACTGAAGGTGTCCTAGGTGTTGGGAAATTGGTGCAAAGGTTACCCAAACCAGTTTATGCTGTCCTTATGACAATTGCAGCTGTGTGGTTCCAAGAGAATGGATCTCGTCTGGGTGAAGACTGCCTTCTTGTAATACACAGATATGGTGTTCCTGAGCATTATGAGAAGTTAAAAGAGTTAACTAGAGGGAGAGCTGTCACCAAAGAGAGCATAAGAGACTTCATTGAAGGCTTAGATATTCCAAAAGAAGCAAAGATGGATCTATTAAAGTTAACACCGGATACTTACATTGGAGCAGCAGTTGAATTGGCCAGAACTGTGGAAAATGCAGTTAATATTGCAAATGGAATGAAGATCTTGGAAACAACTGATTGA 774 0.3902 MILKSMKSGEIGVSCRKEWRKRQIRKITDQVFDKVKNQVQTDHLSFVDLYIAVLLVYNGINKYVTGPHFDPPSKDRVREVIKNCDVDMDGQINRDEFFGFIQQMAPETFHVVRKKLVATLVVAPTVAVSTKKATEGVLGVGKLVQRLPKPVYAVLMTIAAVWFQENGSRLGEDCLLVIHRYGVPEHYEKLKELTRGRAVTKESIRDFIEGLDIPKEAKMDLLKLTPDTYIGAAVELARTVENAVNIANGMKILETTD 257
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu2g0719 257 SUPERFAMILY EF-hand 43 106 IPR011992 -
Ssu2g0719 257 Gene3D - 170 230 - -
Ssu2g0719 257 PANTHER CALCIUM-BINDING EF HAND PROTEIN 16 168 - -
Ssu2g0719 257 Pfam Adenylosuccinate lyase C-terminal 165 230 IPR013539 GO:0004018|GO:0006188
Ssu2g0719 257 Gene3D - 58 121 - -
Ssu2g0719 257 PANTHER S100 CALCIUM-BINDING PROTEIN 16 168 - -
Ssu2g0719 257 ProSitePatterns EF-hand calcium-binding domain. 85 97 IPR018247 -
Ssu2g0719 257 ProSiteProfiles EF-hand calcium-binding domain profile. 72 107 IPR002048 GO:0005509
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu2g0719 Ssu-Chr2 38920697 38927228 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu2g0719 17 168 EF-hand Containing Proteins AT1G64850 55.263 2.73e-61 189
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu2g0719 - - vun:114167513 238.424