Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu2g0718 ATGGGACAAGTCTTTGACAATTCCTGCAACATTTTCGTTCCTCAACTTCCTTCGTTTGTTCGCGACTTCGACGTCATGTTTTCTTCTGTTTTGGATTTTCCCTTCTGTAAGGAGTGGAGGAGAAGGCAAATAAGGAAGATAACAGATCGAGTTTTTGACAAAGTACAGAATCAAATAGAAACTGATAAATTGACTTTTGAAGATCTGTATATTGCTGTTTTACTTGTGTACAATGATATCAACAAGTATATTCCTGGTCCCCATTTTGATCCTCCATCAAAAGAGAGGGTCAAAGAAGTCATCAAgATCTGTGATATCAACTTGGATGGGGAAATTGATCGTAATGAATTTTTTGATTTCATCCTGCAAATGACAGCTGATACATTCACTGTTGTTAGTCAAAAACTTATTGTCACTTTGGTTGTGGCGCCAACAGTTGCAGTGGCAACAAAGAGAGCTACTGAAGGTGTTCCAGGTGTTGGGAGACTGGTGCAAAAGTTACCCAATTCAGTTTATGCTTCCCTTGTGACAATTGCAGCTGTGTGGTTCCAGAAAAAGGCTCTCGAATCTTCACTGTAG 579 0.3938 MGQVFDNSCNIFVPQLPSFVRDFDVMFSSVLDFPFCKEWRRRQIRKITDRVFDKVQNQIETDKLTFEDLYIAVLLVYNDINKYIPGPHFDPPSKERVKEVIKICDINLDGEIDRNEFFDFILQMTADTFTVVSQKLIVTLVVAPTVAVATKRATEGVPGVGRLVQKLPNSVYASLVTIAAVWFQKKALESSL 192
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu2g0718 192 Gene3D - 35 129 - -
Ssu2g0718 192 ProSiteProfiles EF-hand calcium-binding domain profile. 92 127 IPR002048 GO:0005509
Ssu2g0718 192 SUPERFAMILY EF-hand 61 126 IPR011992 -
Ssu2g0718 192 PANTHER S100 CALCIUM-BINDING PROTEIN 36 187 - -
Ssu2g0718 192 PANTHER CALCIUM-BINDING EF HAND PROTEIN 36 187 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu2g0718 Ssu-Chr2 38898606 38903623 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu2g0718 37 182 EF-hand Containing Proteins AT1G64850 67.808 9.69e-73 215
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu2g0718 - - gmx:100526914 263.077