Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu2g0716 atggcGTTGTTGAGTGGTGGCACGCCATGGTCCAAGGTCATTGCTCCTCCCATTTTTCACCACTCTCACACCCCTCGACcaccctttttcttcttccgaCGACGCCGTTTTTCGGTCTCTGCTCTCTCCGAACAACCACCCCTTCCCGTTCGCGTTCGTTTCGCTCCTTCTCCCACAGGAAACCTCCACGTTGGCGGTGCCCGAACGGCCCTCTTCAACTACCTCTTCGCCAGGTCCAAAGGTGGGAAATTTGTGCTGAGAATTGAGGACACTGACTTGGAGAGGTCCACAAGGGAGTCTGAGGAGGCCATGCTCAAAGATCTTTCGTGGCTTGGACTTGATTGGGATGAAGGGCCTGGTGTTGGAGGGGATTATGGGCCCTATAGGCAGTCTGAGAGGAATTCTATGTACAAACAATATGCTGAGAAACTCCACCAATCCAGTTATGTTTATCGCTGCTTCTGTTCGAATGAGGAACTAGAGAAAATGAAGGAGGATGCTAAACTAAAGCAACTGCCTCCAGTGTACACAGGTAAATGGGCCAGTGCAACAGATGAAGAAGTAGAAGAAGAGCTGGCAAAAGGAACTCCTTATACATACCGGTTTCGTGTCCCTAAAGGCAGTTTAAAAATCAATGACCTAATACGAGGCAAAGTTAGTTGGAACTTGGATACGCTTGGAGATTTTGTGATAATGAGAAGTAATGGTCAGCCTGTTTATAACTTTTGTGTAACGGTGGATGATGCTACCATGGCTATTTCCCATGTTATCAGGGCAGAGGAGCATTTACCGAATACCCTAAGGCAGgcattaatatataagGCACTAGGATTTCCCATGCCTTACTTTGCACACGTTTCCTTGATTTTAGCTCCTGATCGGAGTAAATTATCAAAACGACATGGGGCAACATCAGTGGGTCAGTTCCGGGAGATGGGATACCTACCTGAAGCAATGGTGAATTACCTAGCATTATTAGGTTGGGGTGATGGGActgaaaatgagttttttacGCTTGATCAACTTGTTGAAAAATTCACTATTGAACGTGTTAACAAAAGTGGTGCTATTTTTGACTCGACAAAGTTAAGgTGGATGAATGGTCAGCATTTAAGAACGCGTCCATCAGAGGAGTTGACCAAACTTATTGGAGAGCACTGGAAAACATCTGGCTTACTCACAGTATCAGCTGGGCCCTTTATTGATGAAGCAGTTCAACTACTTAAGGATGGGATTGACTTGATACCTGACGCAGACAAGGCCCTTGCTAACTTGCTTTCTTATCCTTTACATTCTACTTTACAGAGCCATGAGACCGAATCTGTCTTGCAAGATAATCTTTCTGAATTTGCTGCTAGCCTCTTGGCTGCCTATGATAGTGGTGATCTGCTAGCAGCACTTGAAGAAGGCCATGCCGGCTGGCAAAAGTGGGTGAAAGGCTTTGGAAAATCACTTAAGCGCAAGGGAAAATTGCTTTTCATGCCCCTCCGACTTCTGTTGACTGGAAAACTCCATGGACCTGACATGGGGGCAAGTGTTGTATTGCTCTATAAAGCTGGGACTAGTGATGTAGTAGCTCCTGAATCTGGCTTTGTGACACTGGATGAAAGATTTAAAATGCTTAGGCAAATCAACTGGGAGACATTGTCCAAGGAGCAACCTGTCAAAGAGACTGCTGCTCCTGTCTAA 1689 0.4458 MALLSGGTPWSKVIAPPIFHHSHTPRPPFFFFRRRRFSVSALSEQPPLPVRVRFAPSPTGNLHVGGARTALFNYLFARSKGGKFVLRIEDTDLERSTRESEEAMLKDLSWLGLDWDEGPGVGGDYGPYRQSERNSMYKQYAEKLHQSSYVYRCFCSNEELEKMKEDAKLKQLPPVYTGKWASATDEEVEEELAKGTPYTYRFRVPKGSLKINDLIRGKVSWNLDTLGDFVIMRSNGQPVYNFCVTVDDATMAISHVIRAEEHLPNTLRQALIYKALGFPMPYFAHVSLILAPDRSKLSKRHGATSVGQFREMGYLPEAMVNYLALLGWGDGTENEFFTLDQLVEKFTIERVNKSGAIFDSTKLRWMNGQHLRTRPSEELTKLIGEHWKTSGLLTVSAGPFIDEAVQLLKDGIDLIPDADKALANLLSYPLHSTLQSHETESVLQDNLSEFAASLLAAYDSGDLLAALEEGHAGWQKWVKGFGKSLKRKGKLLFMPLRLLLTGKLHGPDMGASVVLLYKAGTSDVVAPESGFVTLDERFKMLRQINWETLSKEQPVKETAAPV 562
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu2g0716 562 Pfam tRNA synthetases class I (E and Q), catalytic domain 50 365 IPR020058 GO:0004812|GO:0005524|GO:0043039
Ssu2g0716 562 SUPERFAMILY An anticodon-binding domain of class I aminoacyl-tRNA synthetases 359 518 IPR008925 GO:0000049
Ssu2g0716 562 Pfam Anticodon binding domain 397 517 IPR045462 -
Ssu2g0716 562 ProSitePatterns Aminoacyl-transfer RNA synthetases class-I signature. 56 67 IPR001412 GO:0000166|GO:0004812|GO:0005524|GO:0006418
Ssu2g0716 562 TIGRFAM gltX_bact: glutamate--tRNA ligase 50 518 IPR004527 GO:0000166|GO:0004818|GO:0005524|GO:0006424
Ssu2g0716 562 PANTHER GLUTAMATE--TRNA LIGASE 45 543 - -
Ssu2g0716 562 Hamap Glutamate--tRNA ligase [gltX]. 49 532 IPR004527 GO:0000166|GO:0004818|GO:0005524|GO:0006424
Ssu2g0716 562 CDD GluRS_core 50 373 IPR033910 GO:0006424|GO:0008270
Ssu2g0716 562 PANTHER GLUTAMATE--TRNA LIGASE, MITOCHONDRIAL-RELATED 45 543 - -
Ssu2g0716 562 PRINTS Glutamyl-tRNA synthetase signature 67 78 IPR000924 GO:0000166|GO:0004812|GO:0005524|GO:0043039
Ssu2g0716 562 PRINTS Glutamyl-tRNA synthetase signature 254 262 IPR000924 GO:0000166|GO:0004812|GO:0005524|GO:0043039
Ssu2g0716 562 PRINTS Glutamyl-tRNA synthetase signature 53 65 IPR000924 GO:0000166|GO:0004812|GO:0005524|GO:0043039
Ssu2g0716 562 PRINTS Glutamyl-tRNA synthetase signature 82 95 IPR000924 GO:0000166|GO:0004812|GO:0005524|GO:0043039
Ssu2g0716 562 PRINTS Glutamyl-tRNA synthetase signature 238 248 IPR000924 GO:0000166|GO:0004812|GO:0005524|GO:0043039
Ssu2g0716 562 Gene3D - 432 523 IPR020751 -
Ssu2g0716 562 Gene3D HUPs 42 374 IPR014729 -
Ssu2g0716 562 SUPERFAMILY Nucleotidylyl transferase 50 358 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu2g0716 Ssu-Chr2 38868718 38876688 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu2g0716 K01885 - gmx:100810730 1025