Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu2g0704 ATGGCTTTACAGTTTCTGAAGCACCCCGTAATCATCTCACGAGGTTTGCACAACGAACCAACCCTAACTTTTCTTTCTCGGTTACGAAATCCGAAGCTCCCATTCACAGTGAGATGGGAAAATGCTCAGATTCCAACTTCTTTCAGGAGCTATGCTACTGCAAAATCAGAAAAGGTTTTACAAGTGAAAAAGAAAAAGCGGCTGGATGAAATATGTCTTGAAAAATATGAGCAATATAGTAGATCTGTGATCCAGTCATGGATTTTGCAAGGCAAAGTATATGTGGACGGGAAGGTGATAAATAAGGCTGGTACCCCTGTGCCTGAAAAAGCTGTTGTGGAGATAATGGCTGATGTTCCCAAATATGTATGTAGAGCTGGACATAAGTTGGAAGCTGCCATTGAACAGCTTGGTGTTGATGTTACTGGTAAATTAGCTCTTGATTCTGGGCTGTCAACTGGAGGATTTACTGACTGCTTACTTCAGTATGGCACATCACATGTTTATGGAGTTGACGTAGGTTATGGACAGGTTGCTGACAAAATTCGAAGAGATGAACGTGTATCAGTGATAGAACGGACTAATTTAAGATATCTTGCTGGACTCCCACAAAATGTTGATTTGGTGACTTTAGACCTGTCATTCATCTCTATTCTCTTGgtCATGCCTGCTGTGGTCAATGTCATGAAGGAAAATGCTGCATTAGTGACTTTGGTTAAACCACAATTTGAAGCTCGTAGATCTCAAGTAGGAAAAGGAGGGATAGTGAAAGATCCCATTGTCCATCAAGAGGTTCTTGAGAAGATTATAAAGGGAGTAGAGAACTTTGGTTTCTGTTGTAAAGGTTGGATTGAGTCTCCTCTGAAAGGTGCTGAGGGTAATACAGAATTCCTTGTTCACTTCAACAGAACCCATAAGAAAGGTTCCTGA 930 0.4097 MALQFLKHPVIISRGLHNEPTLTFLSRLRNPKLPFTVRWENAQIPTSFRSYATAKSEKVLQVKKKKRLDEICLEKYEQYSRSVIQSWILQGKVYVDGKVINKAGTPVPEKAVVEIMADVPKYVCRAGHKLEAAIEQLGVDVTGKLALDSGLSTGGFTDCLLQYGTSHVYGVDVGYGQVADKIRRDERVSVIERTNLRYLAGLPQNVDLVTLDLSFISILLVMPAVVNVMKENAALVTLVKPQFEARRSQVGKGGIVKDPIVHQEVLEKIIKGVENFGFCCKGWIESPLKGAEGNTEFLVHFNRTHKKGS 309
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu2g0704 309 Pfam FtsJ-like methyltransferase 122 302 IPR002877 GO:0008168|GO:0032259
Ssu2g0704 309 ProSiteProfiles S4 RNA-binding domain profile. 66 126 - -
Ssu2g0704 309 SMART s4_6 66 131 IPR002942 GO:0003723
Ssu2g0704 309 Pfam S4 domain 67 113 IPR002942 GO:0003723
Ssu2g0704 309 TIGRFAM tly: TlyA family rRNA methyltransferase/putative hemolysin 67 296 IPR004538 GO:0003723
Ssu2g0704 309 Gene3D Vaccinia Virus protein VP39 117 309 IPR029063 -
Ssu2g0704 309 SUPERFAMILY Alpha-L RNA-binding motif 56 244 - -
Ssu2g0704 309 Gene3D - 55 116 IPR036986 GO:0003723
Ssu2g0704 309 PANTHER BACTERIAL HEMOLYSIN-LIKE PROTEIN 62 307 IPR004538 GO:0003723
Ssu2g0704 309 PANTHER BACTERIAL HEMOLYSIN-LIKE PROTEIN 62 307 - -
Ssu2g0704 309 SUPERFAMILY S-adenosyl-L-methionine-dependent methyltransferases 122 301 IPR029063 -
Ssu2g0704 309 CDD S4 66 115 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu2g0704 Ssu-Chr2 38458232 38466093 Proximal
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu2g0704 K06442 - gmx:100781303 556.599