Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Ssu2g0691 | ATGAAGGGTGGGGGGAAGAGAAAGGCTACCTCGGAAGCTCCGAACGAGGTTGTTGCTCCTTCTGATGCTGCGGATTTGGGTGGTGGAGATGGTGGGGGTGCCCAAGTTGCAAACTTTGAGGGTACCCAGTTGCGGAAAGGGGAAGGTGAGGAACCCCATGTGGAGGATTCTGAAGGAGAAggtgaggaagaggaagaagaagatgaggaagaggaggaagatGAGGAAAATGGGGGTGGTGGTGCTCTTGCAGTGGCTCAAGGAGGACAACAAGGTGTTGTTCTTGGCGATGGTTTCTATGAAGTTGAAGCTATACGCCGGAAGAGGGTCCGCAAGGGTCAGCTGCAATACTTTATCAAATGGCGTGGATGGCCTGAGACAGCCAATACTTGGGAGCCTCCAGAAAATCTAGAGTCTGTTCCTGATGTTGTTGAAGCTTTTGAGGAGAgCTTGAGGTCAGGAAAACATCGTAAGCGCAGACGAAAGCACGTGGTGCATCATACTCAACCCAAGAAGCGGCTGGAGCGTTCTACCACCCCTTACAGCCTTCGTCGTTTTTCGACTAGTACAGCTGAGAACCATACCCAGTCTGCTCCTCTTAATGATCCTATCCTTACTGATATTCCCGCCTTTCCTCAGACTGTGATTTTTGCTGATGAAGTGGGAAATGGTGGTGATGGCAGCAGTCTTGGAAAAGCCACACATGGTAATGCTAACGAAACTGCAAATGGTTCTGAACAAAATATTGAAAGGAATGAGGAAAATGATTACGATCCTAAGCTTAGTGAACTTAAAGCTACGACTGCCAATGGGAATGATACAGACAGGCTTGCAATAAGGATTCAAGAACCTAAGGTTCCTTCAGGCAATAGTGGTCAAATGGATGGCACATCAAGGGGGGTTTGCACAGACACAGGTGAAAGTGGTCGCTGCCGGGGAGCCAAAAGGAGAAAATCTGGTTCTGTAAAGAGGTTCAAGAAGGAATCATATGCTGGTGAGCCTTCTAATACACAAAACCCAATTGGCTCATCTATTGGTACCGTTGAGCAAGCACGAACAAGGATTGCTGATGGTGGCGGTAATACTAATCATGCCAGACCTGCTAGCAATATTGTAAGGATTATAAAACCAATAGGCTATTCAGCTTCAGTAGCCAGTGGATTGCAGGATGTTTTAGTAACCTTTGTGGCTTCGAGGTCTGATGGAACAGAAGTGATGGTTGACAACAAGTATCTAAAAGCATTTAATCCACTTCTACTAATCAATTTCTATGAGCAGCATCTCCGCTACAGCCCTACATTGTGA | 1305 | 0.4536 | MKGGGKRKATSEAPNEVVAPSDAADLGGGDGGGAQVANFEGTQLRKGEGEEPHVEDSEGEGEEEEEEDEEEEEDEENGGGGALAVAQGGQQGVVLGDGFYEVEAIRRKRVRKGQLQYFIKWRGWPETANTWEPPENLESVPDVVEAFEESLRSGKHRKRRRKHVVHHTQPKKRLERSTTPYSLRRFSTSTAENHTQSAPLNDPILTDIPAFPQTVIFADEVGNGGDGSSLGKATHGNANETANGSEQNIERNEENDYDPKLSELKATTANGNDTDRLAIRIQEPKVPSGNSGQMDGTSRGVCTDTGESGRCRGAKRRKSGSVKRFKKESYAGEPSNTQNPIGSSIGTVEQARTRIADGGGNTNHARPASNIVRIIKPIGYSASVASGLQDVLVTFVASRSDGTEVMVDNKYLKAFNPLLLINFYEQHLRYSPTL | 434 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Ssu2g0691 | 434 | PANTHER | CHROMO DOMAIN-CONTAINING PROTEIN LHP1 | 1 | 433 | - | - | |
| Ssu2g0691 | 434 | Gene3D | - | 55 | 161 | - | - | |
| Ssu2g0691 | 434 | MobiDBLite | consensus disorder prediction | 1 | 84 | - | - | |
| Ssu2g0691 | 434 | SMART | ChS_2 | 360 | 433 | IPR008251 | GO:0005634 | |
| Ssu2g0691 | 434 | MobiDBLite | consensus disorder prediction | 222 | 344 | - | - | |
| Ssu2g0691 | 434 | MobiDBLite | consensus disorder prediction | 230 | 246 | - | - | |
| Ssu2g0691 | 434 | PANTHER | CHROMO DOMAIN-CONTAINING PROTEIN LHP1 | 1 | 433 | IPR044251 | GO:0006325|GO:0031507 | |
| Ssu2g0691 | 434 | ProSiteProfiles | Chromo and chromo shadow domain profile. | 100 | 159 | IPR000953 | - | |
| Ssu2g0691 | 434 | MobiDBLite | consensus disorder prediction | 247 | 261 | - | - | |
| Ssu2g0691 | 434 | SMART | chromo_7 | 99 | 152 | IPR000953 | - | |
| Ssu2g0691 | 434 | SUPERFAMILY | Chromo domain-like | 89 | 157 | IPR016197 | - | |
| Ssu2g0691 | 434 | CDD | CD_CSD | 100 | 149 | - | - | |
| Ssu2g0691 | 434 | Pfam | Chromo (CHRromatin Organisation MOdifier) domain | 100 | 149 | IPR023780 | - | |
| Ssu2g0691 | 434 | MobiDBLite | consensus disorder prediction | 286 | 304 | - | - | |
| Ssu2g0691 | 434 | MobiDBLite | consensus disorder prediction | 154 | 170 | - | - | |
| Ssu2g0691 | 434 | ProSitePatterns | Chromo domain signature. | 117 | 137 | IPR023779 | - | |
| Ssu2g0691 | 434 | Coils | Coil | 54 | 74 | - | - | |
| Ssu2g0691 | 434 | MobiDBLite | consensus disorder prediction | 54 | 78 | - | - | |
| Ssu2g0691 | 434 | PRINTS | Chromodomain signature | 110 | 124 | IPR017984 | - | |
| Ssu2g0691 | 434 | PRINTS | Chromodomain signature | 125 | 137 | IPR017984 | - | |
| Ssu2g0691 | 434 | PRINTS | Chromodomain signature | 97 | 105 | IPR017984 | - | |
| Ssu2g0691 | 434 | MobiDBLite | consensus disorder prediction | 151 | 183 | - | - |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Ssu2g0691 | Ssu-Chr2 | 38010662 | 38019071 | Dispersed |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Ssu2g0691 | - | - | aprc:113849713 | 578.556 |