Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu2g0668 aTGAATGTTAATGGAATGCCAAAAAGGCCTTCTAGCAGTGTGCCCAAGTGGCACTCTTCTTCCGTCACAACCAAAATTGTGCATAACTTAAATCCTATATGCCAAGCTACCCAACAGTTAACTCTCAAGGGGAAGTTCGTAATCACACACGACAAAAGCAAATCAATACCTGGAAAATTAGTTTCTGTTCAGATTTATAGTGGGACAGATGTGGATCCTGAGACTGGTAAAGGGAAGTTGAGCGAGAAAGCATATTTCAAACAGGGTGAGAGCATGAAACATAGCCATGATGCACAAACCATggcatataaaattaagatccaTGTTGACTCACATTTTGGAACTCCAAGAGCTTTTGTGATTCAAAACCAGCACAAGAAGAAATTCTTCCTTCAGTCTGCATCTATTGAGAATTCTAACAACCGTATCATTCACTTTGATTGCAATTCCTGGATATATCCAATCAAGAAGACCAAATCGGATAGACTCTTCTTCTCAAATAGATGCTATCTTCCAAGTCAGACACCAAGAGCACTAGTGGAACTAAGAAAGGAAGAGCTTGATAGATTGAGGGGCAATGGAATGGGAGAAAGAAAGGAATGGGATAGAATCTATGACTATGACTGCTATAATGACCTTGGTGATCCTGACAAAGGTCCAGAGCACTTTAGACCTGTCCTTGGTGGCTCAAGGTTATTTCCATATCCTCGTAGAGGAAGAACGGGTCGAAAACATAGCACAGCAGGTCCATCAACTGAGAGCCGTCCACAACCAATGAACTTTGACATATATGTTCCATCAGATGAGAGATTTGGCCCCAATAAATTGAAGGAGTTGAAATCAAATTGTGTCCATGCTATGGTGCATTTTTTATCACCAAAGGCGGAATTATTACCACGACGAAGTTCTGCAAGCTTTCAGTCATTTGAAGAGATACTTGACATGTTTTCTAGCAATAGGAACCAAACAATAGAGGGATGGATGAGAGACAACTTGAAGAAACTAATACCTGTTGAGCACTTAAAGGAAATAGATCATGCAATCAAGGAAAACCATTGGCAATTACCTATCCCTCAAATCATATCTGAAAATGATTTGGCTTGGAAAGATGATATGGAGTTTGGACGACAAATGCTTGCAGGAACTCACCCAACCAGAATCCAGTGCTTGACGACATTCCCACCTCAAAACAAATTCGGAATACAGAGTTCAATAAAACAATCGATCATAGAACAGAAGCTAGAGGGATGGACACTTCATCAGGCAATGGAACAGGGAAGAATATTCATGCTGGACCACCATGACTATCTCATTCCATATTTGAACAGAATAAATGCAAATGGGGTGTGTGCTTATGCATCCAGGACTCTGCTATTCTTAAGGAGTGATGGCATGCTTAAGCCATTAACAATAGAACTTAGCTTGCCAGGCTCAGCTCCACACCTTGAAATCAATAGAGTCTTACTTCCAGCCAAGCAGGGACCACAAGCAGCACTTTGGCAGCTTGCTAAAGCTCATGTTTCAGCTAATGATACTGTTTACCATCAACTAATTAGCCATTGGTTATACACCCATGCAGTTGTTGAACCATTTATCATTGCCACCAAAAGAAGGCTAAGTGTAATGCATCCAATCCATCGGTTGTTGAATCCTCATTTCAAAGACACCATGCACATAAATGCCTTGGCAAGACTCATCCTTATAAACTCAGGAGGAATTCTTGAGAGAATATTATCTCCAGGTGAAATCTGTATGCAAATATCTTGTGACCTATATAAAGAGTGGAGATTCAATGAACAAGGACTTCCTGCTGATCTACTCAAAAGGGGCATGGCTGTAAAAGATCCAGACATGACTAACCCCACTGGGATTCAGCTTCTGTTGCTGGACTATCCCTACGCCACTAATGGACTTGAAATATGGGTTGCCATCAAAGAATGGGTGAAGGACTTCTGCTCATTCTTCTACAAAGACAATGAGGCCATCGAGGGTGATGTTGAACTCCAAGCCTGGTGGTCCGAGATTAGAACTCAAGGCCATGGTGACAGGCACAAGGAAACATGGTGGTACCAAATGACTACACTCTCAGACCTTGTGGAAGCATTAACAACACTCATATGGATTGCTTCTGCCAAGCATGCATCTCTAAACTATGGCCAACATGCATACAATGGTTACCCTCCAAACCGCCCCACACGGTGCAGGAAGTTTATTCCTCTAGAAGGGACAGTGGAGTTTGGTGAGTTCCTCAAGGACCCGGATAAGTTTTTCCTCAAGATGCTACCTGATAGGTTTGAGATGAGTCTTGCAGTGGCATTGGTGGATGTGCTCTCAAGGCACACTTGTGATGAGGTCTACTTGGGGTGCCAGCACTCACCAGGGTGGATAGACAATGAAGTGATTCAGAATAGGTTTGCTGAGTTCAAACAAGAACTAAAGGAGATTCAGGCAAGGATCATGCAAAGGAATAGGGACCCTAAGCTTAAGAACAGACGTGGCCCTGCAAACATTGAGTACACTCTTTTGTACCCTGACACCTCTAGTTCTTCTGCCTCAACAAGTGGAATCACCGGAAGGGGGATACCTAATAGCATAtcaatttga 2604 0.4213 MNVNGMPKRPSSSVPKWHSSSVTTKIVHNLNPICQATQQLTLKGKFVITHDKSKSIPGKLVSVQIYSGTDVDPETGKGKLSEKAYFKQGESMKHSHDAQTMAYKIKIHVDSHFGTPRAFVIQNQHKKKFFLQSASIENSNNRIIHFDCNSWIYPIKKTKSDRLFFSNRCYLPSQTPRALVELRKEELDRLRGNGMGERKEWDRIYDYDCYNDLGDPDKGPEHFRPVLGGSRLFPYPRRGRTGRKHSTAGPSTESRPQPMNFDIYVPSDERFGPNKLKELKSNCVHAMVHFLSPKAELLPRRSSASFQSFEEILDMFSSNRNQTIEGWMRDNLKKLIPVEHLKEIDHAIKENHWQLPIPQIISENDLAWKDDMEFGRQMLAGTHPTRIQCLTTFPPQNKFGIQSSIKQSIIEQKLEGWTLHQAMEQGRIFMLDHHDYLIPYLNRINANGVCAYASRTLLFLRSDGMLKPLTIELSLPGSAPHLEINRVLLPAKQGPQAALWQLAKAHVSANDTVYHQLISHWLYTHAVVEPFIIATKRRLSVMHPIHRLLNPHFKDTMHINALARLILINSGGILERILSPGEICMQISCDLYKEWRFNEQGLPADLLKRGMAVKDPDMTNPTGIQLLLLDYPYATNGLEIWVAIKEWVKDFCSFFYKDNEAIEGDVELQAWWSEIRTQGHGDRHKETWWYQMTTLSDLVEALTTLIWIASAKHASLNYGQHAYNGYPPNRPTRCRKFIPLEGTVEFGEFLKDPDKFFLKMLPDRFEMSLAVALVDVLSRHTCDEVYLGCQHSPGWIDNEVIQNRFAEFKQELKEIQARIMQRNRDPKLKNRRGPANIEYTLLYPDTSSSSASTSGITGRGIPNSISI 867
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu2g0668 867 Gene3D - 494 866 - -
Ssu2g0668 867 SMART LH2_4 40 167 IPR001024 GO:0005515
Ssu2g0668 867 Pfam Lipoxygenase 179 844 IPR013819 GO:0016702|GO:0046872
Ssu2g0668 867 Gene3D - 171 273 - -
Ssu2g0668 867 PRINTS Lipoxygenase signature 515 532 IPR013819 GO:0016702|GO:0046872
Ssu2g0668 867 PRINTS Lipoxygenase signature 535 555 IPR013819 GO:0016702|GO:0046872
Ssu2g0668 867 PRINTS Lipoxygenase signature 497 514 IPR013819 GO:0016702|GO:0046872
Ssu2g0668 867 ProSiteProfiles PLAT domain profile. 41 166 IPR001024 GO:0005515
Ssu2g0668 867 PANTHER LIPOXYGENASE 95 865 - -
Ssu2g0668 867 Gene3D PLAT/LH2 domain 18 170 - -
Ssu2g0668 867 SUPERFAMILY Lipase/lipooxygenase domain (PLAT/LH2 domain) 49 170 IPR036392 GO:0005515
Ssu2g0668 867 PRINTS Plant lipoxygenase signature 162 183 IPR001246 GO:0016491
Ssu2g0668 867 PRINTS Plant lipoxygenase signature 234 253 IPR001246 GO:0016491
Ssu2g0668 867 PRINTS Plant lipoxygenase signature 303 324 IPR001246 GO:0016491
Ssu2g0668 867 PRINTS Plant lipoxygenase signature 452 476 IPR001246 GO:0016491
Ssu2g0668 867 PRINTS Plant lipoxygenase signature 136 154 IPR001246 GO:0016491
Ssu2g0668 867 PRINTS Plant lipoxygenase signature 353 369 IPR001246 GO:0016491
Ssu2g0668 867 PRINTS Plant lipoxygenase signature 774 788 IPR001246 GO:0016491
Ssu2g0668 867 PRINTS Plant lipoxygenase signature 201 217 IPR001246 GO:0016491
Ssu2g0668 867 SUPERFAMILY Lipoxigenase 171 867 IPR036226 -
Ssu2g0668 867 PANTHER LIPOXYGENASE 95 865 IPR000907 GO:0016702|GO:0046872
Ssu2g0668 867 MobiDBLite consensus disorder prediction 234 259 - -
Ssu2g0668 867 Gene3D - 366 492 - -
Ssu2g0668 867 Coils Coil 798 825 - -
Ssu2g0668 867 ProSitePatterns Lipoxygenases iron-binding region signature 2. 542 552 IPR020834 GO:0016702|GO:0046872
Ssu2g0668 867 ProSiteProfiles Lipoxygenase iron-binding catalytic domain profile. 169 867 IPR013819 GO:0016702|GO:0046872
Ssu2g0668 867 Pfam PLAT/LH2 domain 64 165 IPR001024 GO:0005515
Ssu2g0668 867 Gene3D - 275 365 IPR027433 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu2g0668 Ssu-Chr2 37413085 37420292 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu2g0668 51 867 Acyl Lipid Metabolism Gene Families AT3G22400 46.459 0.0 792
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu2g0668 K00454 - gmx:100797946 1633.23