Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu2g0660 ATGTCTGGTCACTGGGGGATTCTTGTTTCAGATCCATGGCTTCAGAACCAGTTCACACAAGTGGAGCTTCGCAGCTTGAAGTCCCATTTCATGAGCATGAGGAGGGAGAGTGGGAGGCTTGTGATTGCGGATTTGGCTTCCAAGATGTCAGGGTTGAAGGTGGTGGGAGATAATCTGAGTGAGGAAGAGAGAGCTTCTTGTGTGAAGGATTTGTATCAGAACACTGAGGAGGAGGttgattttgaattgtttcttaAGATCTACTTGAAACTCCAAACATTTGCAAATTCTAGAACGGGAAGTAGTCCAAAGAACTCCTCGGCGTTCCTCAAGGCAGCTACAACCACATTGCTTCACACAATAAGTGAATCTGAGAAAGCATCATATGTAGCACATATAAATCACTATCTTGCACAAGATGAGTTCCTCAAGAAATATCTTCCCATTGATCCTTCAACCAATGAGCTCTTTGAAATTGCGAAAGATGGTGTTCTTCTTTGTAAGCTTATCAATGTGGCAGTTCCAGGGACCATTGATGAACGGGCGATCAATACAAAAAGATTACTCAATCCTTGGGAAAGGAATGAAAATCACACACTTTGCCTCAACTCTGCTAAAGCAATTGGTTGTACAGTAGTCAACATTGGTACTCAGGACTTCATTGAAGGAAGGCGTCATTTGGTGCTTGGGTTGATTTCTCAGATTATTAAGATACAATTATTGGCGGACCTCGATCTAAAGAAAACCCCTCAGCTGCTTGAGTTGCTTGATGATAGTAAGGATATGGAAGAGTTGATGAATCTACCACCAGAAAAGATCCTGTTAAGGTGGATGAATTTCCATTTGAAGAAAGCAGGGTACAAGAAGATTGTCACTAACTTCTCCTCTGATGTGAAGGATGCTGAGGCTTATGCACACCTTCTAAATGTTCTTGCACCTGAATACACCAATCCCTCCACACTGGCAGTTAAAAATCCCTTTGAAAGAGCAAAGTTAGTTCTTGAACATGCTGATAAGATGGGTTGCAAGCGATACTTAACTGCGAGAGACATAGTGGAAGGATCCCCAAATCTTAATCTTGCCTTTGTTGCACATATTTTCCAGCACAGGAATGGACTTTCAGCCCAGACAAAACAACATATGTCTCTCCTGGAAACATTTCCAGATGACACCCAAGACTCCAGAGAAGAAAGAGCATTTCGCCTTTGGATTAATAGCCTTGGCAATTCAACATATATCAACAATGTCTTCGAGGATCTCCGAAACGGGTGGGTTCTTCTAGAGACGCTTGACAAGGTGTCACCAGGGATTGTCAATTGGAAGATTGCTAACAAGCCTCCAATTAAGATGCCATTTAGAAAAGTAGAGAACTGCAACCAAGTTGTGAAAATAGGGAAACAGCTTAAGTTTTCGCTGGTAAATGTTGCTGGAAATGACATTGTGCAGGGAAATAAGAAGTTAATACTAGcttatttgtGGCAATTGATGCGATACAACATCTTACAACTTCTCAAGAACTTGAGATTTCACTCTCGTGGGAAGGAAATAACTGATGCTGATATTTTAGAATGGGCCAACAGCAAGGTTAGCAGCTCCGGAAGTCAAAGCCACATGGACAGTTTTAAGGATAAAAGTTTATCAGATGGAATATTTTTCCTTGAGCTTCTAAGTTCAGTGCAGCCCAGAGCTGTAAATTGGGGTCTTGTAACAAAAGGAGTAACTGACCAAGAGAAAAAGATGAATGCCACCTACATTATCAGTATTGCAAGAAAGCTTGGATGTTCTATATTCCTGCTTCCTGAAGACATCACTGAGGTCAATCAAAAAATGATCCTTACACTAACAGCTAGTATAATGTCTTGGTGTCTAAAACACCCTCATGAGGAACGGAGAGTGGGAACTTCAGATAATGAGAGTGGGAGTCAATTGGAGACTACATCAAATTCAACACTAGATGACTCTGCCTCTGATTCATCGGTAGATGAGAATGGGAACATGTAA 2001 0.4108 MSGHWGILVSDPWLQNQFTQVELRSLKSHFMSMRRESGRLVIADLASKMSGLKVVGDNLSEEERASCVKDLYQNTEEEVDFELFLKIYLKLQTFANSRTGSSPKNSSAFLKAATTTLLHTISESEKASYVAHINHYLAQDEFLKKYLPIDPSTNELFEIAKDGVLLCKLINVAVPGTIDERAINTKRLLNPWERNENHTLCLNSAKAIGCTVVNIGTQDFIEGRRHLVLGLISQIIKIQLLADLDLKKTPQLLELLDDSKDMEELMNLPPEKILLRWMNFHLKKAGYKKIVTNFSSDVKDAEAYAHLLNVLAPEYTNPSTLAVKNPFERAKLVLEHADKMGCKRYLTARDIVEGSPNLNLAFVAHIFQHRNGLSAQTKQHMSLLETFPDDTQDSREERAFRLWINSLGNSTYINNVFEDLRNGWVLLETLDKVSPGIVNWKIANKPPIKMPFRKVENCNQVVKIGKQLKFSLVNVAGNDIVQGNKKLILAYLWQLMRYNILQLLKNLRFHSRGKEITDADILEWANSKVSSSGSQSHMDSFKDKSLSDGIFFLELLSSVQPRAVNWGLVTKGVTDQEKKMNATYIISIARKLGCSIFLLPEDITEVNQKMILTLTASIMSWCLKHPHEERRVGTSDNESGSQLETTSNSTLDDSASDSSVDENGNM 666
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu2g0660 666 MobiDBLite consensus disorder prediction 629 666 - -
Ssu2g0660 666 Gene3D - 508 620 IPR036872 -
Ssu2g0660 666 ProSiteProfiles Calponin homology (CH) domain profile. 123 240 IPR001715 GO:0005515
Ssu2g0660 666 Gene3D - 119 245 IPR036872 -
Ssu2g0660 666 SMART ch_5 517 621 IPR001715 GO:0005515
Ssu2g0660 666 SMART ch_5 270 369 IPR001715 GO:0005515
Ssu2g0660 666 SMART ch_5 125 238 IPR001715 GO:0005515
Ssu2g0660 666 SMART ch_5 396 498 IPR001715 GO:0005515
Ssu2g0660 666 Pfam Calponin homology (CH) domain 396 499 IPR001715 GO:0005515
Ssu2g0660 666 Pfam Calponin homology (CH) domain 151 238 IPR001715 GO:0005515
Ssu2g0660 666 Pfam Calponin homology (CH) domain 518 622 IPR001715 GO:0005515
Ssu2g0660 666 Pfam Calponin homology (CH) domain 269 370 IPR001715 GO:0005515
Ssu2g0660 666 ProSitePatterns Actinin-type actin-binding domain signature 1. 396 405 IPR001589 -
Ssu2g0660 666 SUPERFAMILY Calponin-homology domain, CH-domain 121 619 IPR036872 -
Ssu2g0660 666 CDD CH 124 238 IPR001715 GO:0005515
Ssu2g0660 666 PANTHER ACTIN-BINDING CALPONIN-LIKE (CH) DOMAIN PROTEIN 1 666 - -
Ssu2g0660 666 CDD CH 395 498 IPR001715 GO:0005515
Ssu2g0660 666 ProSiteProfiles Calponin homology (CH) domain profile. 394 500 IPR001715 GO:0005515
Ssu2g0660 666 Gene3D - 246 374 IPR036872 -
Ssu2g0660 666 MobiDBLite consensus disorder prediction 636 666 - -
Ssu2g0660 666 PANTHER FIMBRIN/PLASTIN 1 666 IPR039959 GO:0051015|GO:0051017
Ssu2g0660 666 CDD CH 269 369 IPR001715 GO:0005515
Ssu2g0660 666 ProSiteProfiles Calponin homology (CH) domain profile. 268 371 IPR001715 GO:0005515
Ssu2g0660 666 Gene3D - 390 507 IPR036872 -
Ssu2g0660 666 ProSiteProfiles Calponin homology (CH) domain profile. 515 623 IPR001715 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu2g0660 Ssu-Chr2 37223765 37231916 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu2g0660 1 625 EF-hand Containing Proteins AT5G55400 66.188 0.0 875
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu2g0660 - K17275 gmx:100799696 1294.26