Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu2g0598 ATGGCCATGGCAGTGATTTTTCTCTTTGTCTTGTTATTTTCACTCTCCATATCCAGTGCTGAAATCTCAGGGCAACTAGGAGTGAACTATGGGCAATTGGGGAACGACCTTCCACCACCAAGAATCTCCGTGAGTCTCATAAAGTCCCTGAAAGCGAAGCGCGTGAAAATCTACGATGCAAACCCAGAAATTCTCAAGGCTTTGGAGAACACGGGCATTCAAGTGTCGATCATGCTCCCTAACCAACTTGTCGTCAACGTCTCCACCAACCAAACATTCTCAGATCAATGGGTCGAAAACAACGTGGTACCCTTCTACCCGAAAACACTCATCCGCTACCTCCTCGTCGGCAACGAACTCATTAGCTCCACAGGGAACGAAACATGGCCCCACATCGTCCCTGCAATGCACAGAATCCAACACTCCCTCAGAACCTTCCGTTTGCACAAGGTGAAGGTGGGAACTCCCTTTGCCATGGACGTTCTGGCATCGTCGTTTCCTCCCTCAAATGGTACTTTCAGAAACGACATTGTGTTGCACGTCATAAAGCCCATGTTGAAGTTCCTCCACAAAACCCGCTCTTTTTTCTTCCTCGACGTGTACCCATTCTTTGCGTGGTCTTCAAACCCAACCGACATTAACCTAAGCTACACTCTTTTTGAGTCCAAAAACATAACGGTAACGGATCCGTTTACAGGTTTAATCTACACTAACCTATTTGATCAGATGGTAGACGCCGTTTATTTTGCAATGAAACGGGTCGGGTACCCAGGCATTCGGATCTTCATCGCGGAAACGGGTTGGCCCAATGGAGGAGACTTGGACCAAGCTGGTGCGAACGTTCACAATGCCGCAACTTATAACAGAAATATAGTCAAAAGACTCTCGAGAAAACCAGTTTTGGGAACCCCGGCTCGACCGGGTTTGGTTCTTCCGGCTTTTGTATTTTCGCTTTTTAATGAGAACCTGAAACCGGGTTTGGGTTCGGAGCGACATTTCGGGTTGTTGTACCCGAACGGGTCAAGGGTTTACGACATCGATCTCTCCGGGGAGACGCCGGAGTCGGAGCTCGCACCGGTGCCGAAGCCGGTGGATTATAAAGGGAGAGCGTGGTGTGTGGTGGCAGAGGAAGCAAATGTGACGGTTGTGGCAGCAGCGATATCGTACGCATGTTCGCAGGGGAACGGAACCTGTGACCCGATCCAACCAGGGAAAGCGTGTTTTAAACCCGATTCGATAATGGGGCATGCTAGCTATGCGTTCAGTGCTTACTGGGCGCAGTTTAGGCGTGTGGGTGGAACTTGCTATTTCAATGGACTTGCAACCCAAACTGCAAAGGATCCAAGTTATGGATCTTGCAAGTTCCCAAGTGTTACTCTTTGA 1383 0.4924 MAMAVIFLFVLLFSLSISSAEISGQLGVNYGQLGNDLPPPRISVSLIKSLKAKRVKIYDANPEILKALENTGIQVSIMLPNQLVVNVSTNQTFSDQWVENNVVPFYPKTLIRYLLVGNELISSTGNETWPHIVPAMHRIQHSLRTFRLHKVKVGTPFAMDVLASSFPPSNGTFRNDIVLHVIKPMLKFLHKTRSFFFLDVYPFFAWSSNPTDINLSYTLFESKNITVTDPFTGLIYTNLFDQMVDAVYFAMKRVGYPGIRIFIAETGWPNGGDLDQAGANVHNAATYNRNIVKRLSRKPVLGTPARPGLVLPAFVFSLFNENLKPGLGSERHFGLLYPNGSRVYDIDLSGETPESELAPVPKPVDYKGRAWCVVAEEANVTVVAAAISYACSQGNGTCDPIQPGKACFKPDSIMGHASYAFSAYWAQFRRVGGTCYFNGLATQTAKDPSYGSCKFPSVTL 460
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu2g0598 460 Pfam Glycosyl hydrolases family 17 26 347 IPR000490 GO:0004553|GO:0005975
Ssu2g0598 460 PANTHER BNAC03G35190D PROTEIN 12 452 - -
Ssu2g0598 460 PANTHER GLUCAN ENDO-1,3-BETA-GLUCOSIDASE BG1-RELATED-RELATED 12 452 IPR044965 GO:0004553|GO:0005975
Ssu2g0598 460 Gene3D Glycosidases 25 354 - -
Ssu2g0598 460 SMART X8_cls 370 455 IPR012946 -
Ssu2g0598 460 Gene3D - 366 458 - -
Ssu2g0598 460 ProSitePatterns Glycosyl hydrolases family 17 signature. 259 272 IPR000490 GO:0004553|GO:0005975
Ssu2g0598 460 SUPERFAMILY (Trans)glycosidases 26 347 IPR017853 -
Ssu2g0598 460 Pfam X8 domain 371 442 IPR012946 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu2g0598 Ssu-Chr2 34630237 34634039 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu2g0598 1 460 Glycoside Hydrolase AT4G14080 50.731 0.0 513
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu2g0598 - - ccaj:109805358 800.045