Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu2g0580 ATGGGAACAAAGAGGGGCAATTCCCCAGTGAATGTTTTGTTGGAAAGGTTGAGGAAGCTGTCAATGAAAGTGAAGCTCTTTTGTGGGGCATTGCTTGCTGTTTGTGCTTTGGTAGCCTTAAAGTTCACCGTCAAAAATCACTACTATTACTTCATAGCCTCTGAAGCAATCCATGTTGCTGGGATAATTGCTCTCACATACAAGCTTTTTGCCCTGAAGACCTGCTCTGGTTTATCGCTTAAGACCCAAGAGCTCACAGCTTTATTCCTAGCAGCAAGATTAAGTTGTAGCACCTTGACAGAGGCTAACATACACACCGTGCTAGATCTGATATCTCTTTTTTCAACATTATTGGTTATATGGATGATAAGATTCAAGTTAAAGTCATCCTATATCAAGGAGCTTGACAATCTGCGACTATACTTTGTGATGATCCCTTCTGCAATCCTTGCGATACTAATCCACCCTTTCACAACTCATTGGCGTTTATTTCGAATCGTTTGGGCATTCAGTTTGTATTTGGAAGCGGTTTCTGTTCTCCCTCAACTTCGTTTTATGCAGAACGCAAAGATGATTGAAACATTTACAGGATATTATGTATTCGCTCTCGGTGTTTCAAGATTCATGGCACTGGCTTATTGGATAATTCAGatCTATGAGACTAGAGGGGCATATCTATTTTTGGCTGGGAGTGGCTATTTCTGGTTCTTGGCAGCTTTTCTCGCGGAGATGGTTCAATCGTTCATCTTGGCTGACTTCTGTTACTATTACATGAAGAGTCAAGGAGGCCAACTCTTACAAACACCTACGCCTTTAGGCTTAGCGCTTGGAGGGTTGTGGATCGTCCAATCAAGGAGGCTGACACTTACAAATGCCTACGCCCTCATGCACAACACTTGGAGGGTTATGGACAATCTAGCCAAGGAGGGCGACCACAATAAACGCCTTGCACCCTTAAACTCAGCAGTTGAAGGGTTATGGACAGTCCCTTGTCAGCTTTTAGATATCCCAAACGAGGATGCAACTCTTGGCCGAGCACATTGGTCTCCATGGGATCGATCCATACGGTTGGACACACCCCTCTCCCATAATCGGCATTTAGGAAGAGTGAGCATCACCCATGTAAGATAG 1131 0.4394 MGTKRGNSPVNVLLERLRKLSMKVKLFCGALLAVCALVALKFTVKNHYYYFIASEAIHVAGIIALTYKLFALKTCSGLSLKTQELTALFLAARLSCSTLTEANIHTVLDLISLFSTLLVIWMIRFKLKSSYIKELDNLRLYFVMIPSAILAILIHPFTTHWRLFRIVWAFSLYLEAVSVLPQLRFMQNAKMIETFTGYYVFALGVSRFMALAYWIIQIYETRGAYLFLAGSGYFWFLAAFLAEMVQSFILADFCYYYMKSQGGQLLQTPTPLGLALGGLWIVQSRRLTLTNAYALMHNTWRVMDNLAKEGDHNKRLAPLNSAVEGLWTVPCQLLDIPNEDATLGRAHWSPWDRSIRLDTPLSHNRHLGRVSITHVR 376
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu2g0580 376 PANTHER ER LUMEN PROTEIN-RETAINING RECEPTOR C28H8.4-RELATED 4 266 - -
Ssu2g0580 376 PANTHER ER LUMEN PROTEIN RETAINING RECEPTOR 4 266 IPR000133 GO:0006621|GO:0016021|GO:0046923
Ssu2g0580 376 PRINTS ER lumen protein retaining receptor signature 77 97 IPR000133 GO:0006621|GO:0016021|GO:0046923
Ssu2g0580 376 PRINTS ER lumen protein retaining receptor signature 168 188 IPR000133 GO:0006621|GO:0016021|GO:0046923
Ssu2g0580 376 PRINTS ER lumen protein retaining receptor signature 50 69 IPR000133 GO:0006621|GO:0016021|GO:0046923
Ssu2g0580 376 PRINTS ER lumen protein retaining receptor signature 190 204 IPR000133 GO:0006621|GO:0016021|GO:0046923
Ssu2g0580 376 PRINTS ER lumen protein retaining receptor signature 204 222 IPR000133 GO:0006621|GO:0016021|GO:0046923
Ssu2g0580 376 Pfam ER lumen protein retaining receptor 74 217 IPR000133 GO:0006621|GO:0016021|GO:0046923
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu2g0580 Ssu-Chr2 33754217 33764823 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu2g0580 1 270 Miscellaneous Gene Families AT3G25160 60.294 8.99e-112 325
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu2g0580 K10949 - gmx:100790733 453.751