Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu2g0578 ATGGGAACAAAAAGGGGTAATTCCTCACTGAATGTTTTGTTTGAAAGGTTGAGGAAGCAGTCAATGAAAGTGAAGATCTTTTGTGGTGCATTGCTTGCTGTTTGTGCTTTGGTGGCCTTAAAGTTCACCATCAAAAATCACTACTATTTCTTCATAGCCTCTGAAGCAATCCATGTTGCTGGGATAATTGCCCTCATATACAAGCTTTTCGCCCTGAAGACCTGCTCTGGTTTATCGCTTATAACCCAAGAGCTCACAGCTTTATTCCTAGCAGCAAGATTAAGTTGTAGCACCTTGACAGTGGCTAACATCCACACCGTGCTAGATCTGATATCTTTTTTATCAACATTAGTGGTTATATGGATGATAAGATTCAAGTTAAAGTCATCCTATATCAAGGAGCTTGACAATATGCGACTATACTTTCTGGTGGTCCCTTCCGCAATCCTTGCGATACTAATCCACCCTCACACATCTCACTGGCCTTTAACTCGAATTGTTTGGGCGTTCAGTTTGTATTTGGAAGCTGTTTCTGTTCTCCCTCAACTTCGTTTTATGCAGAACGCAAAGATGATTGAAACATTTACAGGATATTATGTATTCGCCCTCGGTGTTTCAAGATTCGTGGCACTGGCTCATTGGATAATTCAGACGTATGAGACTAGAGGGGCATTTCTATTTTTGGCTGGGAGTGGCTATTTCTGGTTCTTGGCAGCTTTTCTCGCGGAGATGGTTCAATCGTTTATCTTGGCTGACTTCTGTTACTATTACATGAAGAGcTTCATGCAAGGGCAACTTTTGAGGAAAATGCCTGTTTAA 819 0.4127 MGTKRGNSSLNVLFERLRKQSMKVKIFCGALLAVCALVALKFTIKNHYYFFIASEAIHVAGIIALIYKLFALKTCSGLSLITQELTALFLAARLSCSTLTVANIHTVLDLISFLSTLVVIWMIRFKLKSSYIKELDNMRLYFLVVPSAILAILIHPHTSHWPLTRIVWAFSLYLEAVSVLPQLRFMQNAKMIETFTGYYVFALGVSRFVALAHWIIQTYETRGAFLFLAGSGYFWFLAAFLAEMVQSFILADFCYYYMKSFMQGQLLRKMPV 272
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu2g0578 272 Pfam ER lumen protein retaining receptor 74 217 IPR000133 GO:0006621|GO:0016021|GO:0046923
Ssu2g0578 272 PRINTS ER lumen protein retaining receptor signature 50 69 IPR000133 GO:0006621|GO:0016021|GO:0046923
Ssu2g0578 272 PRINTS ER lumen protein retaining receptor signature 190 204 IPR000133 GO:0006621|GO:0016021|GO:0046923
Ssu2g0578 272 PRINTS ER lumen protein retaining receptor signature 77 97 IPR000133 GO:0006621|GO:0016021|GO:0046923
Ssu2g0578 272 PRINTS ER lumen protein retaining receptor signature 168 188 IPR000133 GO:0006621|GO:0016021|GO:0046923
Ssu2g0578 272 PRINTS ER lumen protein retaining receptor signature 204 222 IPR000133 GO:0006621|GO:0016021|GO:0046923
Ssu2g0578 272 PANTHER ER LUMEN PROTEIN RETAINING RECEPTOR 4 271 IPR000133 GO:0006621|GO:0016021|GO:0046923
Ssu2g0578 272 PANTHER ER LUMEN PROTEIN-RETAINING RECEPTOR C28H8.4-RELATED 4 271 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu2g0578 Ssu-Chr2 33707898 33717319 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu2g0578 1 272 Miscellaneous Gene Families AT3G25160 62.500 1.40e-120 344
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu2g0578 K10949 - gmx:100790733 454.136