Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu2g0409 ATGGCTGCCGCTCTCTCGTTCCACTTCCCATGTCCAACGCTCTCTTCTCACTCTCAACTTTCGTTCTCTTCACCTTCCCAATTTAAACCCGACACCGTTGCTTCCCGCCAAAATCTCTGCATCTCCAGCAACACCCACTCTGCCGTCTCTGCTTTCAGAAACTCAACCTCTCCAACTTTTCTCGCAGCGGCTTCTCGGAACACTGAGCCTATGGTCCCTCCTTACAACGTTCTGATAACTGGCTCAACCAAAGGAATAGGGTATGCATTGGCGAAAGAGTTTCTAAAAGCTGGTGACAATGTCCTGATTTGCTCAAGATCAGatGAAAGGGTAGAGAATGCTGTCCAGAGCTTGAAAGTAGAATATGGGGAGCAGCATGTGTGGGGAACTACATGTGATGTGAGAAATGCAGAGGATGTGAAGAATTTAGTTTCATTTGCTCAAGAAAAACTGAAACACATTGATATATGGATCAACAATGCTGGATCAAATGCATATAGCTATAAGTCACTTGCTGAGGCTTCAGATGAAGATCTTATTGAGGTGGTTACAACAAATACACTTGGCTTGATGTTATGTTGTCGAGAGGCAATCAAGATGATGGTGAGCCAGCCTCGCGGAGGCCATATTTTCAATATTGATGGAGCAGGTTCAGATGGAAGACCAACTCCCAgGTTTGCTGCATATGGAGCAACAAAGAGGAGTGTGGTGCATTTAACAAAGTCATTACAGGCAGAATTGCAGATGCAAGATGTTAAAAATGTCGTGGTGCATAATCTTTCGCCAGGAATGGTTACAACGGATCTTCTCATGTCTGGTGTTAATACAAAGCAGGCAAAGTTTTTCATTAATGTCTTGGCTGAACCAGCCGAAGTGGTTGCAGAATACTTAGTTCCAAACATTAGATCCATCCCTGCTAACGGATCAATGAAACCAACATACATTCGATTCCTCACTGGTTTGAGAGCCTATTCCCAGATATTTTCAGTTAAGATAAAGCCTAATCCGCAGTAG 1014 0.4379 MAAALSFHFPCPTLSSHSQLSFSSPSQFKPDTVASRQNLCISSNTHSAVSAFRNSTSPTFLAAASRNTEPMVPPYNVLITGSTKGIGYALAKEFLKAGDNVLICSRSDERVENAVQSLKVEYGEQHVWGTTCDVRNAEDVKNLVSFAQEKLKHIDIWINNAGSNAYSYKSLAEASDEDLIEVVTTNTLGLMLCCREAIKMMVSQPRGGHIFNIDGAGSDGRPTPRFAAYGATKRSVVHLTKSLQAELQMQDVKNVVVHNLSPGMVTTDLLMSGVNTKQAKFFINVLAEPAEVVAEYLVPNIRSIPANGSMKPTYIRFLTGLRAYSQIFSVKIKPNPQ 337
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu2g0409 337 PANTHER CHLOROPHYLL(IDE) B REDUCTASE NOL, CHLOROPLASTIC 14 329 - -
Ssu2g0409 337 CDD SDR_c 77 298 - -
Ssu2g0409 337 PRINTS Glucose/ribitol dehydrogenase family signature 152 163 IPR002347 -
Ssu2g0409 337 PRINTS Glucose/ribitol dehydrogenase family signature 202 218 IPR002347 -
Ssu2g0409 337 PRINTS Glucose/ribitol dehydrogenase family signature 229 248 IPR002347 -
Ssu2g0409 337 PRINTS Glucose/ribitol dehydrogenase family signature 253 270 IPR002347 -
Ssu2g0409 337 PRINTS Glucose/ribitol dehydrogenase family signature 76 93 IPR002347 -
Ssu2g0409 337 PANTHER NON-SPECIFIC LIPID TRANSFER PROTEIN-RELATED 14 329 - -
Ssu2g0409 337 Gene3D - 75 310 - -
Ssu2g0409 337 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 76 295 IPR036291 -
Ssu2g0409 337 Pfam short chain dehydrogenase 77 272 IPR002347 -
Ssu2g0409 337 ProSitePatterns Short-chain dehydrogenases/reductases family signature. 216 244 IPR020904 GO:0016491
Ssu2g0409 337 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 208 216 IPR002347 -
Ssu2g0409 337 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 152 163 IPR002347 -
Ssu2g0409 337 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 229 248 IPR002347 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu2g0409 Ssu-Chr2 24372287 24386599 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu2g0409 77 269 Acyl Lipid Metabolism Gene Families AT1G24360 32.663 1.33e-17 80.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu2g0409 K13606 - gmx:100797874 556.984