Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu2g0199 ATGGTTTTCATTGGGAATCATAGCCAATTTGTTGATAGTGTGTGTGCAATTGTTGTCAAGGGTCAATGGGGCAATCTGTTGAAGGTGAAGAATGCTTCTGTTCTCACTTCCTCTACCATTCACCAGGTACTTTTGCAGCTCTCATTCTATGGTTATGGGCTCTCTCATTCCTTCCCATTCTTCAAATGGCTTGACTCCATCCCACATTATAGCCATTCCATGCAATGTTCATGGGCCATGATTCACATCCTCACTAGACACAAGCATTTCAAAACTGCACAACACATGCTTGAAAAAATTGCCCACAAGGATTTTCTTTCATCACCTTCAGTTTTGAGCACTTTGGTGAGGACTCATGACAACCCAGAAGTTAATTCTCAAGTGTTGAGCTGGCTTGTCATACATTATGCTAAGTCAAAGATGACACAGGATGCAATTCAAGTTTTTGAGCAGATGAGGTTACATGAAGTCAAACCTCATTTGCATGCTTGTACTGTACTTTTGAATTCCTTGTTGAAGGATGGAGTTACTCATATGGTGTGGAAAATTTACAAGAGAATGGTACAAGTTGGGGTTGTTCCCAATATGTACATTTACAATTGTTTATTCCATGCTTGTTCCAAATCAGGAGATGTGGAAAGGGCAGAACAGTTATTAAATGAGATGAACATAAAGGGTGTGGTTTGTGACATCTTCACATACAATACTTTGATATCATTGTATTGCAGGAAAGGTATGCACTATGAGGCTTTATCCATCCAGGACAGAATGGAAAGAGAGGGCATAAACCTTGATATTGTTAGTTATAACTCTCTTATTTATGGATTTTGTAAAGAAGGTAGGATGAGAGAAGCTATGAGGATGTTTAgcgaaataaaaaatgtaactcCCAATCACGTGACATATACTACACTGATTGATGGTTATTGTAAAACAAATGAACTGGAGCAAGCTCTGAAAATGCGGGAACTGATGGAGGCCAAAGGATTGTACCCTAGAGTTGttacttataattcaattttgCGCAAGCTGTGCCAAGATGGCAGGATTAGGGATGCAAACAAACTCTTGAATGAGATGGGTGAAAGGAAAGTTCAAGCTGACAATATCACATGCAACACACTTATTAATGCTTACTGCAAGATTGGAGATTTGAAATCTGCTTTGAAATTTAAGAACAAGATGTCAGAAGCCGGACTAAAACCTGATCCATTTACATATAAGGCACTGATTCATGGGTTCTGCAAGACCAGTGGGCTGGAAAGTGCAAAGGAGTTAATGTTCAGCATGCTTGATGCTGGATTTAGCCCCAGTTACTGCACATACTCATGGATTGTAGATGGCTACTGTAAGAAAGACAATATGGATGCAGTTTTAGCACTGCCAGATGAGTTTCTTAGCAGAGGTCTTTGTCTTGATGTTTCAGTATACAGGGCATTGATAAGAAGGTCATGCAAGGTAGAAAGGATTGAATGTGCGGAAAAGTTATTCAATCATATGGAAGGAAAGGGTATATCAGGTGACAGTGTTATCTACACCAGTCTTGCATATGCTTATTGGAAAGTGGGAAATGCAAGTGCTGCATCGAGTATGTTAGAAGAGATGGCTAGGAGAAGGTTGATGATCACAGTCAAACTTTATAGATGTTTTAGTACTTCTGATGCCAGTGAAAACAACGTGTCGCAGATCTTCTGGAATCATGTGGTGGATAGGGGTCTGATGTTGAGAAATACAATGAATAAAATACAGCAGATGCTGATATGA 1764 0.3889 MVFIGNHSQFVDSVCAIVVKGQWGNLLKVKNASVLTSSTIHQVLLQLSFYGYGLSHSFPFFKWLDSIPHYSHSMQCSWAMIHILTRHKHFKTAQHMLEKIAHKDFLSSPSVLSTLVRTHDNPEVNSQVLSWLVIHYAKSKMTQDAIQVFEQMRLHEVKPHLHACTVLLNSLLKDGVTHMVWKIYKRMVQVGVVPNMYIYNCLFHACSKSGDVERAEQLLNEMNIKGVVCDIFTYNTLISLYCRKGMHYEALSIQDRMEREGINLDIVSYNSLIYGFCKEGRMREAMRMFSEIKNVTPNHVTYTTLIDGYCKTNELEQALKMRELMEAKGLYPRVVTYNSILRKLCQDGRIRDANKLLNEMGERKVQADNITCNTLINAYCKIGDLKSALKFKNKMSEAGLKPDPFTYKALIHGFCKTSGLESAKELMFSMLDAGFSPSYCTYSWIVDGYCKKDNMDAVLALPDEFLSRGLCLDVSVYRALIRRSCKVERIECAEKLFNHMEGKGISGDSVIYTSLAYAYWKVGNASAASSMLEEMARRRLMITVKLYRCFSTSDASENNVSQIFWNHVVDRGLMLRNTMNKIQQMLI 587
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu2g0199 587 Gene3D Tetratricopeptide repeat domain 350 463 IPR011990 GO:0005515
Ssu2g0199 587 Gene3D Tetratricopeptide repeat domain 76 251 IPR011990 GO:0005515
Ssu2g0199 587 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 265 295 IPR002885 -
Ssu2g0199 587 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 298 332 IPR002885 -
Ssu2g0199 587 PANTHER ATPASE EXPRESSION PROTEIN 3 6 582 - -
Ssu2g0199 587 TIGRFAM PPR: pentatricopeptide repeat domain 197 230 IPR002885 -
Ssu2g0199 587 TIGRFAM PPR: pentatricopeptide repeat domain 300 332 IPR002885 -
Ssu2g0199 587 TIGRFAM PPR: pentatricopeptide repeat domain 267 293 IPR002885 -
Ssu2g0199 587 TIGRFAM PPR: pentatricopeptide repeat domain 370 403 IPR002885 -
Ssu2g0199 587 TIGRFAM PPR: pentatricopeptide repeat domain 335 368 IPR002885 -
Ssu2g0199 587 TIGRFAM PPR: pentatricopeptide repeat domain 163 195 IPR002885 -
Ssu2g0199 587 TIGRFAM PPR: pentatricopeptide repeat domain 232 265 IPR002885 -
Ssu2g0199 587 TIGRFAM PPR: pentatricopeptide repeat domain 405 438 IPR002885 -
Ssu2g0199 587 TIGRFAM PPR: pentatricopeptide repeat domain 476 508 IPR002885 -
Ssu2g0199 587 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN 6 582 - -
Ssu2g0199 587 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 508 542 IPR002885 -
Ssu2g0199 587 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 230 264 IPR002885 -
Ssu2g0199 587 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 368 402 IPR002885 -
Ssu2g0199 587 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 160 194 IPR002885 -
Ssu2g0199 587 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 333 367 IPR002885 -
Ssu2g0199 587 Gene3D Tetratricopeptide repeat domain 464 540 IPR011990 GO:0005515
Ssu2g0199 587 Gene3D Tetratricopeptide repeat domain 252 349 IPR011990 GO:0005515
Ssu2g0199 587 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 125 159 IPR002885 -
Ssu2g0199 587 Pfam PPR repeat 510 539 IPR002885 -
Ssu2g0199 587 Pfam PPR repeat 136 153 IPR002885 -
Ssu2g0199 587 Pfam PPR repeat 164 192 IPR002885 -
Ssu2g0199 587 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 403 437 IPR002885 -
Ssu2g0199 587 Pfam PPR repeat 468 501 IPR002885 -
Ssu2g0199 587 Pfam PPR repeat 328 360 IPR002885 -
Ssu2g0199 587 Pfam PPR repeat family 194 238 IPR002885 -
Ssu2g0199 587 Pfam PPR repeat family 368 416 IPR002885 -
Ssu2g0199 587 Pfam PPR repeat family 265 311 IPR002885 -
Ssu2g0199 587 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 473 507 IPR002885 -
Ssu2g0199 587 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 195 229 IPR002885 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu2g0199 Ssu-Chr2 11560387 11562150 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu2g0199 80 573 Glycosyltransferase AT1G05670 29.423 2.24e-69 236
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu2g0199 - - gmx:100804589 1105.51