Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu1g4271 ATGGATACCGGCGGCAATTCTTTACCATCTGCACCTGATGGGGTGAAGAGAAAGGTGTGCTATTTCTATGACCCAGAGGTTGGGAACTACTATTATGGGCAAGGTCACCCTATGAAGCCACATCGTATACGGATGACCCATGCTCTTCTTGCCCATTATGGATTGCTTCAGCACATGCAGGTCCATAAGCCATTTCCTGCTAGAGACAGGGACCTTTGTCGTTTTCACGCTGATGATTATGTTGCTTTCCTTAGAAGCATAACTCCTGAAACACAGCAGGATCATCTGAGGCAACTCAAACGCTTTAATGTTGGTGAAGATTGTCCTGTTTTTGATGGCCTCTACTCTTTCTGCCAAACTTATGCTGGGGGTTCAGTTGGGGGTGCTGTCAAGTTAAATCATGACCAATGTGATATTGCTGTCAACTGGGCTGGTGGGTTGCATCATGCCAAGAAGTGTGAGGCTTCTGGATTTTGCTATGTTAATGATATAGTCCTCGCAATCTTAGAACTTCTTAAACAGCATGAGCGTGTTCTATATGTGGACATTGATATCCACCATGGAGACGGTGTGGAGGAAGCTTTCTACACTACTGACAGAGTCATGACTGTTTCTTTCCATAAATTTGGTGACTATTTTCCTGGTACTGGGGACGTACGTGATATTGGATATGGAAAAGGAAAATACTACTCTCTTAATGTTCCGCTTGATGATGGCATTGATGATGAGAGTTATCATTTCTTGTTCAAACCAATAATTGGCAAAGTAATGGAAGTGTTCAGGCCTGGTGCAGTAGTTCTCCAGTGTGGTGCTGATTCTTTATCTGGAGACCGATTGGGatgttttaatctttcaatCAGGGGTCATGCAGAGTGTGTCAGATACATGAGATCATTCAATGTGCCCCTCTTGCTACTAGGTGGTGGTGGCTACACCATCCGGAATGTTGCTCGTTGTTGGTGTTATGAGACAGGAGTTGCTCTTGGAATAGAAGTTGATGACAAAATGCCACAGCACgagtattatgaatattttggtCCAGATTATACCCTTCATGTTGCCCCAAGTAACATGGAAAACAAGAATTCTCATCATTTACTTGAAGAAATTCGATCTACGCTACTTGAGAATCTTTCCAAGCTGCAGCATGCTCCTAGTGTCCAATTTCAGGAAAGGCCTCCTGATTCTGATCTTGGAGAGGCAGATGAAGATCATGATGATGGAGATGAGCCATGGGAGCCAGATTCCGACATGGACATTGATGTTGAACGTGAGCTTGTCCCAAgcaaagtgaaaaaagaaattgcTGAACCTCAGCTCAATGATCTGGAGGACCAGAGAAGAAGTGGAGAGAATTTGAGAGGCTCTGATACTGCAGTTGCTGAAACTTGCATGAAGGCTCTAGATATTTCTTCTCAGCAAGCTGATGAAGATAATGTGAAAGTTGAACAGAGTATTGTGAATGATTTGGCCAAAGAAACGGACCTGAAGTGTTAA 1497 0.4235 MDTGGNSLPSAPDGVKRKVCYFYDPEVGNYYYGQGHPMKPHRIRMTHALLAHYGLLQHMQVHKPFPARDRDLCRFHADDYVAFLRSITPETQQDHLRQLKRFNVGEDCPVFDGLYSFCQTYAGGSVGGAVKLNHDQCDIAVNWAGGLHHAKKCEASGFCYVNDIVLAILELLKQHERVLYVDIDIHHGDGVEEAFYTTDRVMTVSFHKFGDYFPGTGDVRDIGYGKGKYYSLNVPLDDGIDDESYHFLFKPIIGKVMEVFRPGAVVLQCGADSLSGDRLGCFNLSIRGHAECVRYMRSFNVPLLLLGGGGYTIRNVARCWCYETGVALGIEVDDKMPQHEYYEYFGPDYTLHVAPSNMENKNSHHLLEEIRSTLLENLSKLQHAPSVQFQERPPDSDLGEADEDHDDGDEPWEPDSDMDIDVERELVPSKVKKEIAEPQLNDLEDQRRSGENLRGSDTAVAETCMKALDISSQQADEDNVKVEQSIVNDLAKETDLKC 498
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu1g4271 498 MobiDBLite consensus disorder prediction 383 419 - -
Ssu1g4271 498 PRINTS Histone deacetylase signature 123 143 IPR003084 GO:0004407|GO:0016575
Ssu1g4271 498 PRINTS Histone deacetylase signature 223 236 IPR003084 GO:0004407|GO:0016575
Ssu1g4271 498 PRINTS Histone deacetylase signature 71 89 IPR003084 GO:0004407|GO:0016575
Ssu1g4271 498 PRINTS Histone deacetylase signature 102 119 IPR003084 GO:0004407|GO:0016575
Ssu1g4271 498 PRINTS Histone deacetylase signature 240 258 IPR003084 GO:0004407|GO:0016575
Ssu1g4271 498 PRINTS Histone deacetylase signature 164 180 IPR003084 GO:0004407|GO:0016575
Ssu1g4271 498 PRINTS Histone deacetylase signature 38 55 IPR003084 GO:0004407|GO:0016575
Ssu1g4271 498 Pfam Histone deacetylase domain 36 324 IPR023801 -
Ssu1g4271 498 PIRSF HDAC_I_euk 5 484 IPR003084 GO:0004407|GO:0016575
Ssu1g4271 498 PRINTS Histone deacetylase superfamily signature 145 168 IPR000286 -
Ssu1g4271 498 PRINTS Histone deacetylase superfamily signature 177 192 IPR000286 -
Ssu1g4271 498 PRINTS Histone deacetylase superfamily signature 262 272 IPR000286 -
Ssu1g4271 498 MobiDBLite consensus disorder prediction 436 452 - -
Ssu1g4271 498 MobiDBLite consensus disorder prediction 436 457 - -
Ssu1g4271 498 PANTHER HISTONE DEACETYLASE 19 3 491 - -
Ssu1g4271 498 Gene3D Histone deacetylase domain 15 388 IPR037138 -
Ssu1g4271 498 PANTHER HISTONE DEACETYLASE 3 491 - -
Ssu1g4271 498 SUPERFAMILY Arginase/deacetylase 17 381 IPR023696 -
Ssu1g4271 498 MobiDBLite consensus disorder prediction 400 419 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu1g4271 Ssu-Chr1 103390880 103413168 Dispersed/Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu1g4271 K06067 - gmx:100795375 989.178