Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu1g4270 ATGAGTGGAGCTGTTCTTGTTGCCGTTGCTGCTGCCATCGGTAATTTACTGCAAGGATGGGATAATGCGACTATTGCAGGATCTATCTTGTACATAAAAAGGGAGTTTCAATTAGAAAGTGAACCCACAGTTGAAGGTCTAATTGTGGCTATGTCACTTATTGGAGCCACCGTGGTTACTACGTGCTCTGGAGCCCTATCAGACTTGCTAGGCCGACGTCCATTGTTGATTATCTCCTCTgtcctttattttgttagttctCTTGTGATGCTATGGTCTCCAAATGTTTATATCCTCCTCTTTGCAAGACTTTTAGATGGTTTGGGAATTGGTTTGGCAGTTACCTTGGTACCTCTTTACATATCTGAGACAGCTCCTCCTGAAATTAGGGGATTACTCAATACACTTCCACAGTTCACTGGTTCTGCCGGAATGTTTTTCTCCTACTGTATGGTGTTTGGGATGTCACTGATGAAGGCTCCAAGCTGGAGAATCATGTTGGGTGTTCTTTCAATCccttctcttatttattttgcacTCACGCTGTTGTTCTTGCCTGAGTCTCCAAGATGGCTTGTCAGTAAAGGCCGAATGCTTGAGGCCAAGAAGGTTTTGCAGCGCCTTCGTGGAAGGGAAGATGTTTCTGGTGAAATGGCTTTACTGGCTGAAGGTCTTGGAGTTGGGGGTGATACAGCCATAGAAGAGTATATAATTGGTCCAGCCAATGAACTTTCTGATGAAGAGGATCCATCCAGAGAAAAAGATCAGATTAAGTTGTATGGACCAGAACAAGGTCAGTCCTGGGTTGCTAGACCTGTTGCTGGACAAAGTTCTATTGGAATTGTATCTCGGAAAGGAAGCGTGGTAAATCAGAGTGGTCTAGTGGACCCTCTAGTGACCCTCTTTGGTAGCGTCCATGAGAAGCTTCCGGAAACAGGAAGCATGCGAAGCACCCTTTTTCCACACTTTGGAAGTATGTTTAGTGTTGGGGGAAATCAGCCTAGGAATGAAGATTGGGATGAAGAAAGCCTTGCCAGAGAGGGTGATGATTATGTCTCTGATGCTGCTGCCGGTGATTCTGATGACAATTTGCAGAGTCCATTGATCTCACGTCAAACAACAAGCCTGGATAAGGACATACCTCCTGCTGCCCATAGTAACCTTTCAAGCATGAGGCAAGGTAGTCTTTTACATGGAAATGCAGGAGAACCCACTGGTAGTACCGGGATTGGTGGTGGTTGGCAGCTAGCATGGAAATGGTCTGAAAGAGAGGGCCCAGATGGAAAGAAGGAAGGTGGCTTCAAGAGAATATATTTACGCCAAGAGGGTGGTCCTGGATCTAGGCGTGGGTCTGTGGTTTCACTACCTGGTGGTGATTTACCAACTGATGGTGAGGTTGTACAGGCTGCTGCTTTGGTGAGTAATTCAGCCCTTTATAACAAGGAGCTTATGCGTCAACGGCCAGTTGGACCAGCTATGATTCATCCATCTGAAACAGCTGCAAAAGGGCCAAGTTGGAGTGATCTTTTTGAACCTGGGGTGAAACATGCATTGATTGTTGGGGTGGGACTTCAAATTCTTCAGCAGTTCTCTGGTATAAATGGGGTCCTCTACTATACACCTCAAATTCTTGAGCAGGCAGGTGTTGGTTATCTTCTTTCAAACCTAGGCCTTGGTTCTACTTCTTCGTCCTTTCTTATTAGTGCGGTGACAACCTTGTTGATGCTTCCTTGTATAGCCGTTGCCATGAGGCTTATGGATGTTTCTGGCAGAAGGACTTTGCTGCTCAGTACAATCCCCGTCTTGATAGTATCTCTTCTCATATTAGTCTTGGGGAGTCTTGTGGATTTGGGCAGCACTGCAAATGCATCAATCTCAACCATTAGTGTTATTGTCTATTTCTGTTTCTTTGTCATGGGATTTGGGCCAATTCCTAATATACTTTGTGCAGAGATCTTCCCCACTCGAGTTCGTGGTCTCTGCATTGCCGTTTGTTGTCTTACCTTTTGGATCTGTGATATCATTGTCACCTACACACTCCCAGTTATGCTCAATTCTGTAGGCCTCGCTGGTGTTTTTGGTATTTATGCTGTCGTGTGCTTCATAGCTTGGGTGTTTGTCTTTTTGAAAGTTCCAGAAACCAAGGGCATGCCACTGGAAGTGATCATTGAGTTCTTCTCTGTCGGAGCAAAACAGATTGACGATGTCAAGCACAACTGA 2220 0.4464 MSGAVLVAVAAAIGNLLQGWDNATIAGSILYIKREFQLESEPTVEGLIVAMSLIGATVVTTCSGALSDLLGRRPLLIISSVLYFVSSLVMLWSPNVYILLFARLLDGLGIGLAVTLVPLYISETAPPEIRGLLNTLPQFTGSAGMFFSYCMVFGMSLMKAPSWRIMLGVLSIPSLIYFALTLLFLPESPRWLVSKGRMLEAKKVLQRLRGREDVSGEMALLAEGLGVGGDTAIEEYIIGPANELSDEEDPSREKDQIKLYGPEQGQSWVARPVAGQSSIGIVSRKGSVVNQSGLVDPLVTLFGSVHEKLPETGSMRSTLFPHFGSMFSVGGNQPRNEDWDEESLAREGDDYVSDAAAGDSDDNLQSPLISRQTTSLDKDIPPAAHSNLSSMRQGSLLHGNAGEPTGSTGIGGGWQLAWKWSEREGPDGKKEGGFKRIYLRQEGGPGSRRGSVVSLPGGDLPTDGEVVQAAALVSNSALYNKELMRQRPVGPAMIHPSETAAKGPSWSDLFEPGVKHALIVGVGLQILQQFSGINGVLYYTPQILEQAGVGYLLSNLGLGSTSSSFLISAVTTLLMLPCIAVAMRLMDVSGRRTLLLSTIPVLIVSLLILVLGSLVDLGSTANASISTISVIVYFCFFVMGFGPIPNILCAEIFPTRVRGLCIAVCCLTFWICDIIVTYTLPVMLNSVGLAGVFGIYAVVCFIAWVFVFLKVPETKGMPLEVIIEFFSVGAKQIDDVKHN 739
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu1g4270 739 ProSiteProfiles Major facilitator superfamily (MFS) profile. 7 715 IPR020846 GO:0022857
Ssu1g4270 739 PANTHER MONOSACCHARIDE-SENSING PROTEIN 1 1 733 - -
Ssu1g4270 739 CDD MFS_GLUT_like 13 193 - -
Ssu1g4270 739 Gene3D MFS general substrate transporter like domains 478 728 IPR036259 -
Ssu1g4270 739 PANTHER - 1 733 - -
Ssu1g4270 739 Gene3D MFS general substrate transporter like domains 2 258 IPR036259 -
Ssu1g4270 739 ProSitePatterns Sugar transport proteins signature 2. 105 130 IPR005829 GO:0016021|GO:0022857|GO:0055085
Ssu1g4270 739 Pfam Sugar (and other) transporter 7 219 IPR005828 GO:0016021|GO:0022857|GO:0055085
Ssu1g4270 739 Pfam Sugar (and other) transporter 502 723 IPR005828 GO:0016021|GO:0022857|GO:0055085
Ssu1g4270 739 PRINTS Sugar transporter signature 15 25 IPR003663 GO:0016020|GO:0022857|GO:0055085
Ssu1g4270 739 PRINTS Sugar transporter signature 528 538 IPR003663 GO:0016020|GO:0022857|GO:0055085
Ssu1g4270 739 PRINTS Sugar transporter signature 627 648 IPR003663 GO:0016020|GO:0022857|GO:0055085
Ssu1g4270 739 PRINTS Sugar transporter signature 650 662 IPR003663 GO:0016020|GO:0022857|GO:0055085
Ssu1g4270 739 PRINTS Sugar transporter signature 100 119 IPR003663 GO:0016020|GO:0022857|GO:0055085
Ssu1g4270 739 ProSitePatterns Sugar transport proteins signature 1. 63 80 IPR005829 GO:0016021|GO:0022857|GO:0055085
Ssu1g4270 739 CDD MFS_GLUT_like 516 713 - -
Ssu1g4270 739 SUPERFAMILY MFS general substrate transporter 6 720 IPR036259 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu1g4270 Ssu-Chr1 103379705 103385185 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu1g4270 1 739 Organic Solute Cotransporters AT4G35300 72.874 0.0 1050
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu1g4270 - - gmx:100790278 1309.28