Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu1g4267 ATGGAGACTTATCCCCGAATATCTCCACGTCCACTACTACTTATGTTCGTCTTTTCGGTTTTGTCTTGTGGTGTAGTTTCTTCCGACGTTTCAACAACCAAAGGTTCTCGGGCCCTCTATGATTGTGACCAATATCATCGCACCAAGAAGCAGGAACAAGATATTTCTACAACTAGAAACCGCCATCATCCCGATGAAAAGGACATTGATATAATTGCAACGTACAGCGATGCTTCTGGCCATGTTCGACTGGCTAGGTTGAAACTGAAGGATTTATCTGACTCCTGGATTTGGGAAAACCCAACTAATGGAAACAATGAATTTCAAAAGAGCTCCCAGCAGTTGATGGAATCATTTCAAACTGATTCAAGATTTGAAGACAATGCCAAGCACTCCAAAGATGAACATTATCCTGAAGAAAGCAAAGTTGAACTTCCCCGTTCCTCATCAATGACACCAATGAAGATCAAGCGTCGGGTTATGCGGCAAGAAAGAAGGAAAGCACGTGCAGCTGAGCTTATTCAGGAAGACAAAGAAACTGACAATCCCATTGTATCAGCAGCAATTGAACACTCTGAAGAATTTGATACCACTATCAAGGGAAGGTATAGCATATGGAGGAGAGAATATGAAAACCCAAATTCTGATTCAACTCTGAAACTCATGCGAGATCAAATAATAATGGCCAAAGCATATGCCAACATTGCAAAGTCTAAGAACAAAACTGTTCTATACGAAGCTCTTGTCAAGAACTCCAGAGATAGTCAACAAGCTATAGGAGAAGCCAGTTCTGATACCGAGCTTCACCTTGGAGCACTTGATCGAGCAAAAGCTATGGGTCATGTTCTTTCCATAGCAAAGGATCAACTTTATGACTGCCTTTTGGTGGCAAGGAAGTTCAGGGTGATGCTTCAATCAACTGAAGATAGAGTGAATATACAGAAGAAAAGAAGTGCATTCTTGATTCAGCTGGCTGCAAAAACTGTGCCTAGACCATTGCATTGCCTTCCCCTGCAACTTGCAGCGGATTATTACCTGCAGGGCTATCATAAGAAAGGAAATCTTGACAAAGAAAAGATTGAAGATCCATCTCTTTACCACTATGCTATCTTTTCTGATAATGTACTGGCTACATCTGTGGTTGTTAATTCTACTGTGCAGAATGCAAAGGAACCTGAGAAACATGTATTCCATATAGTGACGGATAAGTTGAATTTTGCAGCAATGAGAATGTGGTTTCTCATCAACCCTCCTTCTAAAGCAACCATTGAAGTTCAGAATATTGATGATTTAAAGTGGCTGAATTCCTCATATTGTTCTGTTCTACGTCAACTTGAATCAGCAAGAATCAAGGAATATTACTTTAAAGCTAATCATCCTTCCTCCCTTTCTGTTGGTTCTGACAATCTAAAATATAGAAATCCTAAATATTTGTCAATGCTAAATCACCTAAGGTTCTACCTTCCTGAAGTTTATCCAAAATTAAACAGAGTTCTATTCTTGGACGATGACATTGTGGTGCAGAAAGATTTGACACCTCTTTGGTCAATTGATTTGAAAGGTATGGTGAATGGTGCAGTGGAGACATGCAAGGAGAGCTTCCATAGGTTTGATAAatacttaaactttagtaatccACTGATTTCCAATAACTTCAGTCCTGAGGCATGTGGCTGGGCATTTGGCATGAATATTTTTGACTTGAAGGAGTGGAAGAAACGAAACATCACTGGTATCTATCATCGGTGGCAAGATATGAATGAGGATAGAACCCTCTGGAAGCTTGGAACCTTACCCCCAGGATTAATCACCTTTTATAATCTGACCTATCCGTTAGATCGCGGCTGGCATGTTTTGGGACTTGGCTATGACCCAGCTCTGAATCTAACAGAGATAGAGAATGCCGCTGTCATTCACTACAATGGAAACTACAAGCCATGGCTGAATCTTGCTGTTTCCAAATATAAATCGTACTGGTCCAGATATGTTATGTTCGATAATCCATATCTTCGCGTTTGCAACCTTAGCGAATAG 2034 0.4012 METYPRISPRPLLLMFVFSVLSCGVVSSDVSTTKGSRALYDCDQYHRTKKQEQDISTTRNRHHPDEKDIDIIATYSDASGHVRLARLKLKDLSDSWIWENPTNGNNEFQKSSQQLMESFQTDSRFEDNAKHSKDEHYPEESKVELPRSSSMTPMKIKRRVMRQERRKARAAELIQEDKETDNPIVSAAIEHSEEFDTTIKGRYSIWRREYENPNSDSTLKLMRDQIIMAKAYANIAKSKNKTVLYEALVKNSRDSQQAIGEASSDTELHLGALDRAKAMGHVLSIAKDQLYDCLLVARKFRVMLQSTEDRVNIQKKRSAFLIQLAAKTVPRPLHCLPLQLAADYYLQGYHKKGNLDKEKIEDPSLYHYAIFSDNVLATSVVVNSTVQNAKEPEKHVFHIVTDKLNFAAMRMWFLINPPSKATIEVQNIDDLKWLNSSYCSVLRQLESARIKEYYFKANHPSSLSVGSDNLKYRNPKYLSMLNHLRFYLPEVYPKLNRVLFLDDDIVVQKDLTPLWSIDLKGMVNGAVETCKESFHRFDKYLNFSNPLISNNFSPEACGWAFGMNIFDLKEWKKRNITGIYHRWQDMNEDRTLWKLGTLPPGLITFYNLTYPLDRGWHVLGLGYDPALNLTEIENAAVIHYNGNYKPWLNLAVSKYKSYWSRYVMFDNPYLRVCNLSE 677
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu1g4267 677 MobiDBLite consensus disorder prediction 103 122 - -
Ssu1g4267 677 MobiDBLite consensus disorder prediction 103 149 - -
Ssu1g4267 677 Pfam Glycosyl transferase family 8 335 650 IPR002495 GO:0016757
Ssu1g4267 677 MobiDBLite consensus disorder prediction 123 143 - -
Ssu1g4267 677 SUPERFAMILY Nucleotide-diphospho-sugar transferases 366 669 IPR029044 -
Ssu1g4267 677 PANTHER GALACTURONOSYLTRANSFERASE 4-RELATED 40 676 IPR029993 GO:0047262
Ssu1g4267 677 PANTHER GALACTURONOSYLTRANSFERASE 3-RELATED 40 676 - -
Ssu1g4267 677 CDD GT8_like_1 366 663 - -
Ssu1g4267 677 Gene3D Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A 368 667 IPR029044 -
Ssu1g4267 677 ProSiteProfiles Prokaryotic membrane lipoprotein lipid attachment site profile. 1 23 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu1g4267 Ssu-Chr1 103260824 103264624 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu1g4267 51 677 Glycosyltransferase AT4G38270 67.402 0.0 900
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu1g4267 K13648 - gmx:100781749 1189.87