Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu1g4259 ATGCGTGTTGATGTTATTTGTGGTAGGAAGCTGGGGAGAGCAATGCGGAAGACAAGCAGGGGGGGCCTTGTGCCCGGGGGTGTGTGTTGCAGCCAATACGGGTGGTGTGGCTCAACCCCTGACTACTGCGGCCAGGGTTGCCAAAGTCAGTGCGGGGGATCTACTGGTGATCTTAGCAGCATCATCCCCAGGAACACCTTCGAGCAGATGCTGAAACATCGCAATGATGGAGGGTGCCAGGGCAAAGGGTTTTACACCTACGATGCTTTCATCGCAGCTGCCAAGGCTTTCCCCAGCTTTGGCAACACCGGAGACACTGCCACTCGCAAAAGGGAGATTGCCGCCTTCTTCGGCCAAACTTCTCACGAAACTACTGGGGGATGGGCAAGTGCACCTGATGGACCATATGCTTGGGGATACTGCTTTGTTAGGGAGCAAAACCCAAGTGCCTACTGTTCCCCAAGCGCCCAATACCCTTGTGCTCCTGGCAAGCAATACTATGGTCGGGGTCCCATCCAAATCTCATGGAACTACAACTACGGACAGTGTGGAAGAGCAATAGGAGTGGACTTGCTGAACAACCCAGATCTAGTGGCGACTGACGCAGTGATCTCGTTCAAGTCAGCCATCTGGTTCTGGATGACGGCACAGTCACCGAAGCCATCCTGCCACGACGTCATCACCGGACGATGGAACCCCTCCGCTGCTGATCAGGCGGCGGGCCGGCTTCCCGGCTACGGCACTGTTACCAACATCATCAACGGCGGCCTTGAATGCGGGAGAGGGCAGGACAGCAGGGTGCAGGATCGCATCGGTTTCTACAAGAGATACTGTGACTTACTTGGCGTTGGTTATGGCAACAACCTTGACTGCTTCTCTCAGAGGCCATTTGGCAATTCGCTACTCCTCGATGCCATCATCTAA 924 0.5519 MRVDVICGRKLGRAMRKTSRGGLVPGGVCCSQYGWCGSTPDYCGQGCQSQCGGSTGDLSSIIPRNTFEQMLKHRNDGGCQGKGFYTYDAFIAAAKAFPSFGNTGDTATRKREIAAFFGQTSHETTGGWASAPDGPYAWGYCFVREQNPSAYCSPSAQYPCAPGKQYYGRGPIQISWNYNYGQCGRAIGVDLLNNPDLVATDAVISFKSAIWFWMTAQSPKPSCHDVITGRWNPSAADQAAGRLPGYGTVTNIINGGLECGRGQDSRVQDRIGFYKRYCDLLGVGYGNNLDCFSQRPFGNSLLLDAII 307
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu1g4259 307 Pfam Chitin recognition protein 25 51 IPR001002 GO:0008061
Ssu1g4259 307 CDD ChtBD1_GH19_hevein 7 52 - -
Ssu1g4259 307 Gene3D - 61 291 - -
Ssu1g4259 307 PANTHER CHITINASE-RELATED 17 300 - -
Ssu1g4259 307 PRINTS Chitin-binding domain signature 30 37 IPR001002 GO:0008061
Ssu1g4259 307 PRINTS Chitin-binding domain signature 22 30 IPR001002 GO:0008061
Ssu1g4259 307 PRINTS Chitin-binding domain signature 37 44 IPR001002 GO:0008061
Ssu1g4259 307 PANTHER CHITINASE 2 17 300 - -
Ssu1g4259 307 CDD chitinase_GH19 62 291 - -
Ssu1g4259 307 ProSitePatterns Chitinases family 19 signature 2. 204 214 IPR000726 GO:0004568|GO:0006032|GO:0016998
Ssu1g4259 307 SUPERFAMILY Lysozyme-like 57 298 IPR023346 -
Ssu1g4259 307 PIRSF Endochitinase 5 298 IPR016283 GO:0004568|GO:0005975
Ssu1g4259 307 Pfam Chitinase class I 61 291 IPR000726 GO:0004568|GO:0006032|GO:0016998
Ssu1g4259 307 ProSitePatterns Chitinases family 19 signature 1. 79 101 IPR000726 GO:0004568|GO:0006032|GO:0016998
Ssu1g4259 307 Gene3D Endochitinase, domain 2 144 200 - -
Ssu1g4259 307 SUPERFAMILY Plant lectins/antimicrobial peptides 22 54 IPR036861 GO:0008061
Ssu1g4259 307 SMART ChitinBD_3 6 51 IPR001002 GO:0008061
Ssu1g4259 307 Gene3D - 6 55 IPR036861 GO:0008061
Ssu1g4259 307 ProSiteProfiles Chitin-binding type-1 domain profile. 4 53 IPR001002 GO:0008061
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu1g4259 Ssu-Chr1 103114414 103115470 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu1g4259 7 306 Glycoside Hydrolase AT3G12500 69.805 1.71e-156 439
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu1g4259 K20547 - egr:104419011 518.464