Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu1g4258 ATGGAAGGGTTGGCGGTTCCAGTTGCACAATCACAACTGTTGCCGTTTCCAAAGTTTGCCTTTGCCGCCATCCCCACAGCTAATAGTAACGCAGTTGCAGGATTTGTCTCTCTCAGACGACACCGTGGACGCGGGTTTCGTTTTCGCACTTCTTTGTCTCTTCCCGAACAAGTCACAGTCACAGAGAAGGATCATTCTAATCCTAATTGTGTGAGTGGGGATTCCATACGGCATAGATTTCTGAGTTTTTATGCTTCTCGCGGTCACAAGGTTCTTCCCAGTGCTTCTCTGGTCCCAGATGATCCCACTGTTCTGCTCACCATCGCAGGGATGCTTCAATTCAAGCCTATCTTCCTAGGCAAGGTTCCAAGACAAGTACGTTGTGCTGCTACTGCACAAAGATGCATCCGTACTAATGATATCCATAATGTTGGCCTTACTGCTAGACATCAGACCTTCTTTGAAATGCTTGGAAACTTCAGCTTTGGTGATTACTTCAAAAAACAAGCTATTCTATGGGCATGGGAGCTTTCCACCGCAGAgtTTGGCCTGCCACCAGACAGATTGTGGGTTAGTGtttatgaagatgatgatgaggCTTTTCAGCTATGGTCTGATGAGGTTGGTGTCCCAGTTGAGCACATAAAGAGGTTGGGCGAAGAGGACAACTTCTGGACCAGTGGAGTGACAGGTCCCTGTGGTCCTTGCtcagaaatttattatgattttcatCCTGAGAGGGGATGTGTAGATGCTGATCTTAGTGATGATACAAGGTTTATAGAGTTCTACAACTTAGTATTCATGCAATACAACAAAAAAGATGACAGTTCTCTTGAACCTCTAAAGCAGAAGAACATAGATACTGGCCTTGGACTGGAGCGTATGGCTCGCATTCTTCAAAAGGTTCCAAACAATTATGAAACTGACTTGATTTTCCCCATCATAGAGAAGGCCTCTAAATTAGCAAATGTTTCATATGGCATTGCTGATGATCAGACAAAGAGGAATCTGAAAATTATAGGAGATCACATGCGTGCAATTGTATTTCTCATCTCTGATGGAGTTGTCCCATCAAATGTTGGGAGAGGCTATGTAGTTCGGCGGCTTATTAGAAGGGTTGTTCGTACAGGCAGGTTGCTTGGTATAAAGGGTGATGGTAGGGGAGACCTTGAAGGAGCATTTTTACCAATTATTGCCGAGAAGGTAGTGGCATTAAGTACACACATTGATGCTGATGTGAAGAACAAAGCACCTCGTATCTTTGAGGAGTTGAAGAGAGAAGAGCTTCGGTTTGTGCAAACACTGGAGAGAGGAGAAAAGTTGCTTGAGGAGAAACTTGCTGATGCTTTATCAAGTGCAGAAAGAAATGGAACTGTGCCTTGCTTGGCTGGCGAGGATGTGTTTCTTTTATATGATACTTATGGATACCCAATGGAAATAACAAAAGAAGTGGCTGAAGAACGTGGTGTGAGTATTGATATGGATGGTTTTGATATTGAGATGGAGAAGCAAAGGCGTCAATCTCAAGCTGCACACAATACTGTCAAACTTACCATTGAAAACAGGGAAAATATTGCAGAGAATGTACCTGACACTGAATTTATTGGATATGACTGCCTTCATTGTAAAGCAATGATAGAAAGCCTAATGGTAAATGGCGATCCAGCTGTACAGGCCAGTGAAGGGACCAATGTGGAACTTCTATTGAACAAGACCCCATTTTATGCTGAATCAGGGGGTCAAATTGGCGATCATGGTTTTCTATATATTTCAGAGGGTGAGAATCAACCAAAAGCTGTTGTTGAGATAATAGATGTTCAGAAATCTTTAGGTAACATATTTGTTCACAAGGGTACAGTCCAAAAGGGTGTTGTAGAGGTTGGCAAAGTAGTGGAAGCAGCAGTTGATGTGAAGCTGAGGCAGCGAGCTAAGGTTCATCATACTGCTACTCATTTACTACAAGCTgcacttaaaaaagttattggtCAGGAGACCTCACAAGCTGGTTCATTGGTGGCATTTGATCGTCTCAGGTTTGATTTCAACTTCCACCGACCACTTCATGACAGTGAGCTTGCTGAAATTGAAATGCTAATCAATGGATGGATTGAGGATGCAACACTACTTCAAACCAAAGTGATGCCTCTTGCTGATGCAAAAAGTGCTGGGGCTATTGCAATGTTTGGAGAAAAATATGGAGAAGAGGTACGTGTTATAGAGGTTCCTGGTGTATCGATGGAACTTTGTGGTGGGACTCATGTCAGTAATACTTCTGAAATTCGtggttttaaaataatctcAGAACAGGGTATTGCATCTGGAATCAGGCGTATTGAAGCTGTAGCTGGGGAAGCTTTCATTGAATATATCAATGCCCGAGACTTTTATCTGAAGCAGCTATGTTCCACTCTCAAAGTTAAACCCGAAGAAGTGACAACAAGGATAGAGAACCTTTTAGAGGAGTTACGGGTAGCAAGAAATGAAAATTCTGCTGTGCGTGCAAAAGCAGCAATCTACAAAGCTTCAGTCATTGAAAGCAAAGCATTGGTGGTGGGGAAGTACAGGGTACTAGTTGAGTGCTTGGATGATGTTGATGCTGAGTCACTTAAAAGTGCCGCAGAATATTTACTGGAAACACTAACAGATCCAGCAGCTGTGGTACTGGGCTCATGTCCAGGTGAAGGGAAGGTTAGTCTAGTAGCTGCTTTTACTCCAGGGGTGGTTGATCAGGGGATTCAGGCAGGTAAGTTTATTGGACAAATAGCAAAATTatgtggtggtggaggaggtGGAAGGCCCAATTTTGCTCAGGCTGGTGGGAGGAAGCCTGAAAATTTGGCAAGTGCCCTCGCTAAGGCTCGGTCAGAGCTTATAGCTACTCTATGTGAAAAAGGAAATTGA 2904 0.4215 MEGLAVPVAQSQLLPFPKFAFAAIPTANSNAVAGFVSLRRHRGRGFRFRTSLSLPEQVTVTEKDHSNPNCVSGDSIRHRFLSFYASRGHKVLPSASLVPDDPTVLLTIAGMLQFKPIFLGKVPRQVRCAATAQRCIRTNDIHNVGLTARHQTFFEMLGNFSFGDYFKKQAILWAWELSTAEFGLPPDRLWVSVYEDDDEAFQLWSDEVGVPVEHIKRLGEEDNFWTSGVTGPCGPCSEIYYDFHPERGCVDADLSDDTRFIEFYNLVFMQYNKKDDSSLEPLKQKNIDTGLGLERMARILQKVPNNYETDLIFPIIEKASKLANVSYGIADDQTKRNLKIIGDHMRAIVFLISDGVVPSNVGRGYVVRRLIRRVVRTGRLLGIKGDGRGDLEGAFLPIIAEKVVALSTHIDADVKNKAPRIFEELKREELRFVQTLERGEKLLEEKLADALSSAERNGTVPCLAGEDVFLLYDTYGYPMEITKEVAEERGVSIDMDGFDIEMEKQRRQSQAAHNTVKLTIENRENIAENVPDTEFIGYDCLHCKAMIESLMVNGDPAVQASEGTNVELLLNKTPFYAESGGQIGDHGFLYISEGENQPKAVVEIIDVQKSLGNIFVHKGTVQKGVVEVGKVVEAAVDVKLRQRAKVHHTATHLLQAALKKVIGQETSQAGSLVAFDRLRFDFNFHRPLHDSELAEIEMLINGWIEDATLLQTKVMPLADAKSAGAIAMFGEKYGEEVRVIEVPGVSMELCGGTHVSNTSEIRGFKIISEQGIASGIRRIEAVAGEAFIEYINARDFYLKQLCSTLKVKPEEVTTRIENLLEELRVARNENSAVRAKAAIYKASVIESKALVVGKYRVLVECLDDVDAESLKSAAEYLLETLTDPAAVVLGSCPGEGKVSLVAAFTPGVVDQGIQAGKFIGQIAKLCGGGGGGRPNFAQAGGRKPENLASALAKARSELIATLCEKGN 967
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu1g4258 967 SUPERFAMILY ThrRS/AlaRS common domain 636 795 IPR018163 GO:0000166
Ssu1g4258 967 CDD AlaRS_core 74 303 - -
Ssu1g4258 967 Hamap Probable alanine--tRNA ligase, chloroplastic. 61 964 IPR027522 GO:0009507
Ssu1g4258 967 Coils Coil 816 836 - -
Ssu1g4258 967 Hamap Alanine--tRNA ligase [alaS]. 72 962 IPR023033 GO:0004813
Ssu1g4258 967 Gene3D Bira Bifunctional Protein; Domain 2 71 304 IPR045864 -
Ssu1g4258 967 SUPERFAMILY Class II aaRS and biotin synthetases 73 307 IPR045864 -
Ssu1g4258 967 Pfam DHHA1 domain 817 956 IPR003156 GO:0003676
Ssu1g4258 967 Gene3D - 784 845 - -
Ssu1g4258 967 TIGRFAM alaS: alanine--tRNA ligase 76 941 IPR002318 GO:0000166|GO:0005737
Ssu1g4258 967 PRINTS Alanyl-tRNA synthetase signature 288 301 IPR002318 GO:0000166|GO:0005737
Ssu1g4258 967 PRINTS Alanyl-tRNA synthetase signature 339 355 IPR002318 GO:0000166|GO:0005737
Ssu1g4258 967 PRINTS Alanyl-tRNA synthetase signature 261 272 IPR002318 GO:0000166|GO:0005737
Ssu1g4258 967 PRINTS Alanyl-tRNA synthetase signature 139 150 IPR002318 GO:0000166|GO:0005737
Ssu1g4258 967 PRINTS Alanyl-tRNA synthetase signature 363 376 IPR002318 GO:0000166|GO:0005737
Ssu1g4258 967 SUPERFAMILY Translation proteins 531 636 IPR009000 -
Ssu1g4258 967 Gene3D - 708 761 - -
Ssu1g4258 967 SUPERFAMILY Putative anticodon-binding domain of alanyl-tRNA synthetase (AlaRS) 308 535 IPR018162 GO:0000166|GO:0004813|GO:0005524|GO:0005737|GO:0006419
Ssu1g4258 967 SMART tRNA_SAD_4 737 780 IPR012947 GO:0004812|GO:0005524|GO:0043039
Ssu1g4258 967 Gene3D - 647 782 - -
Ssu1g4258 967 Pfam tRNA synthetases class II (A) 76 638 IPR018164 GO:0000166|GO:0004813|GO:0005524|GO:0006419
Ssu1g4258 967 Pfam Threonyl and Alanyl tRNA synthetase second additional domain 737 780 IPR012947 GO:0004812|GO:0005524|GO:0043039
Ssu1g4258 967 ProSiteProfiles Alanyl-transfer RNA synthetases family profile. 71 793 IPR018165 GO:0003676|GO:0004813|GO:0005524|GO:0006419
Ssu1g4258 967 PANTHER ALANYL-TRNA SYNTHETASE 72 957 - -
Ssu1g4258 967 PANTHER ALANINE--TRNA LIGASE, MITOCHONDRIAL 72 957 - -
Ssu1g4258 967 Gene3D - 848 958 - -
Ssu1g4258 967 Gene3D - 557 636 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu1g4258 Ssu-Chr1 103093812 103099481 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu1g4258 K01872 - gmx:100788288 1679.46