Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu1g4253 ATGTCGTGTTTGTTGCCGCACTTCAACTGCCACCTCGATGCTTTCAGGACTCATCTCTATGCTCTTCCTACCCATCTATCAAAAACAAGACCAAATTTGTGTTTCCAGTCGCAATGCGTCTTGTCTGCCACATCTCCTTCAACGCTGCTTAATTTGGAAAAGAAGTTGGCATTAGATGCTCCTTCTGATCCAAACACGTCTTGGCCATATATTGCTGCTGTTGCCCCTCCCACACAGGCAATCTTTAAAGCAACCTTATCTACAGAATCACTTCTTACTAGTGAGGAGGCTGTAATAGCTGCTGCTGCGTCTGAAGCTCTTGCTCTTGCTAAAGCAGCTGTGAAGGTTGCAAAGGATGCAGCtttattagtaaaaaagaaGCCCCCAGTAGAAGCAGAGTATAGATCACATttttcttccaaatctgatgATTTACTTCTCAAATGGTTTCAACATATGGAAGCGGTAGATGGTGTAGCAGGAGAATCCATGGGTGCTGGAGCAGAAATAATAGAAGGTGTTGACATAAGCCACAGTGAAGAGGAGTTTGATGATGTAGACTCTTCCCATGAGGAACTCAAGCGTCTGCCGGAACAGCTTTCTGACAGTATAGCTGTAAGATCTAGGCGCCAAACAGAAAGAAAAGCTAGAAGAGTTAGAGCAGCAGAGAAGGCTACCACAAATATTGCATCTTTTAAGTCTGGCTCGTCCAGCAGGAGAAAGCGTGTTTCTATGCAAGAAGTAGATTATTCAGATCCACTTCGTTACTTAAGAACAACAACCAGCGCTTCTAGGCTTCTTACTCCAACTGAAGAAATTAAGTTGTCAGAAGGAATACAGGACCTTCTAAAGCTTGAAAAACTCCAGGAGGATCTTGCAGAAAGATTTGGTGGTCAGCCCACGTTTGCTCAATGGGCTGCAGTGGCAGGGGTAGATCAGAAGACACTCAGGAAACGTTTAAATTATGGTATATTTTGCAAAGACAAAATGATTAAAAGCAATATACGACTTGTCATATCAATTGCTAAGAATTATCAGGGATCTGGGATGAATCTGCAAGATCTTGTCCAGGAAGGATGCCGTGGCCTTGTAAAAGGGGCAGAGAAGTTTGATGGTACCAAGGGTTTTAAATTCTCCACCTATGCTCATTGGTGGATTAAACAGGCTGTTCGGAAATCACTTTCTGATCAGTCCAGGACTATTCGCTTGCCATTCCACATGGTCGAGGCAACTTACAGAGTGAAGGAGGCCAGAAAACAATTGTATAGTGAAAATGGAAGACAGCCTGATGATGAAGAAGTTGCTGAAGCCACTGGGTTGTCAATGAAGAGGCTTAATGCTGTACTTTTGACCCCAAAAGCTCCCAGATCTCTGGAACAGAAGATTGGGATCAACCAGAACCTTAAACCTTCAGAAGTAATTGCTGGTCCTGATGCTGAAACAGCTGAAGAACAGCTCCTTAAGCAGTTCATGAAGAAGGACCTGGAAGAGGCACTGGACAGTCTAAATCCAAGAGAGAGGCAGGTGGTAAGATGGAGATTTGGCATGGATGACGGAAGGGCGAAGACCCTGCAAGAGATAGGGGAGATGTTGGGTGTGAGTAGGGAGAGAATTAGGCAAATTGAGTCAAGTGCTTTTAAGAAGCTTAAGAACAAGAAGAGAACCAATCATTTGCAGCAGTATTTGATTTCATAA 1695 0.4313 MSCLLPHFNCHLDAFRTHLYALPTHLSKTRPNLCFQSQCVLSATSPSTLLNLEKKLALDAPSDPNTSWPYIAAVAPPTQAIFKATLSTESLLTSEEAVIAAAASEALALAKAAVKVAKDAALLVKKKPPVEAEYRSHFSSKSDDLLLKWFQHMEAVDGVAGESMGAGAEIIEGVDISHSEEEFDDVDSSHEELKRLPEQLSDSIAVRSRRQTERKARRVRAAEKATTNIASFKSGSSSRRKRVSMQEVDYSDPLRYLRTTTSASRLLTPTEEIKLSEGIQDLLKLEKLQEDLAERFGGQPTFAQWAAVAGVDQKTLRKRLNYGIFCKDKMIKSNIRLVISIAKNYQGSGMNLQDLVQEGCRGLVKGAEKFDGTKGFKFSTYAHWWIKQAVRKSLSDQSRTIRLPFHMVEATYRVKEARKQLYSENGRQPDDEEVAEATGLSMKRLNAVLLTPKAPRSLEQKIGINQNLKPSEVIAGPDAETAEEQLLKQFMKKDLEEALDSLNPRERQVVRWRFGMDDGRAKTLQEIGEMLGVSRERIRQIESSAFKKLKNKKRTNHLQQYLIS 564
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu1g4253 564 SUPERFAMILY Sigma2 domain of RNA polymerase sigma factors 251 400 IPR013325 GO:0003700|GO:0006352|GO:0006355
Ssu1g4253 564 TIGRFAM sigma70-ECF: RNA polymerase sigma factor, sigma-70 family 328 552 IPR014284 GO:0003700|GO:0006352|GO:0006355
Ssu1g4253 564 PANTHER RNA POLYMERASE SIGMA FACTOR SIGB 26 563 - -
Ssu1g4253 564 Gene3D RNA Polymerase Primary Sigma Factor 91 402 - -
Ssu1g4253 564 PIRSF Sigma_factor_SigC 25 564 IPR016262 -
Ssu1g4253 564 Pfam Sigma-70 region 3 409 485 IPR007624 GO:0003700|GO:0006352|GO:0006355
Ssu1g4253 564 Gene3D - 484 564 IPR036388 -
Ssu1g4253 564 CDD Sigma70_r4 492 550 - -
Ssu1g4253 564 Gene3D - 403 478 IPR036388 -
Ssu1g4253 564 SUPERFAMILY Sigma3 and sigma4 domains of RNA polymerase sigma factors 462 561 IPR013324 -
Ssu1g4253 564 PRINTS Major sigma-70 factor signature 378 386 IPR000943 GO:0003700|GO:0006352|GO:0006355
Ssu1g4253 564 PRINTS Major sigma-70 factor signature 538 549 IPR000943 GO:0003700|GO:0006352|GO:0006355
Ssu1g4253 564 PRINTS Major sigma-70 factor signature 354 367 IPR000943 GO:0003700|GO:0006352|GO:0006355
Ssu1g4253 564 PRINTS Major sigma-70 factor signature 502 514 IPR000943 GO:0003700|GO:0006352|GO:0006355
Ssu1g4253 564 PRINTS Major sigma-70 factor signature 523 538 IPR000943 GO:0003700|GO:0006352|GO:0006355
Ssu1g4253 564 ProSitePatterns Sigma-70 factors family signature 2. 523 549 IPR000943 GO:0003700|GO:0006352|GO:0006355
Ssu1g4253 564 Pfam Sigma-70 region 2 330 399 IPR007627 GO:0003700|GO:0006352|GO:0006355
Ssu1g4253 564 SUPERFAMILY Sigma3 and sigma4 domains of RNA polymerase sigma factors 398 449 IPR013324 -
Ssu1g4253 564 Pfam Sigma-70, region 4 498 550 IPR007630 GO:0003700|GO:0006352|GO:0006355
Ssu1g4253 564 PANTHER RNA POLYMERASE SIGMA FACTOR RPO 26 563 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu1g4253 Ssu-Chr1 103034118 103038380 Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu1g4253 - - gmx:100788815 934.095