Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu1g4251 ATGGAAGGCGAGAGGAAAAGAGGGGCGCGTGTGTGCTGCGTATGCAACAAAGCAAGAGCTTCGGTGAAAAGGCCGAAAACCCTAGAGCACATATGCAGGGAGTGCTTCTACGATGCTTTCGAGGCTGAGATTCATCGAGTCATTGTTGAGAACCAGCTATTTAGGCCTGGCGAGCGCGTCGCAATTGGTGCTTCTGGCGGCAAGGATTCAACCGTCCTTGCTTACGTCCTCTCCAAACTGAACCGCCTCCACAATTACGGTCTCCATCTCTTCCTCTTGTCCGTCGATGAGGGAATCACCGGCTACCGCGACGACTCTCTCCAAACAGTTCATCGCAACCAAATTCAGTACGGACTCCCTCTCACAGTCGTCTCTTATAAGGACTTGTACGGATGGACTATGGACCAAATCGTTAGCCTCATTGGTTTCAAAAACAATTGCACTTTCTGTGGCGTCTTCCGTCGCCAGGCCCTTGATCGAGGTGCTGCACTGTTGAAAGTAGACAAACTTGTTACCGGCCACAATGCCGATGATATTGCAGAGACCGTTCTCCTCAACCTCGTAAGAGGAGATGTTGCTAGaTTGAGTAGATGCACCTCTATAACCACCGGTGAGGATGGGCCCATTCCCAGGTGCAAACCTTTCAAGTATGCGTACGAGAAGGAGATTGTCATGTATGCATATTTCAAGAGGCTCGACTACTTTTCCACTGAATGCATTTATTCTCCAAATGCATATCGAGGTTTTGCCCGCGAGTTTATCAAGGATTTGGAAAGAATCAGACCTAGGGCGATTCTTGACATCATCAAATCAGGGGAGAATTTCAGGATTTCTACGACTACCAAAATGCCGGAGCAGGGAACATGCGAGCGGTGTGGTTATATTTCTAGTCAGAAATGGTGTAAAGCTTGTGTTCTGCTTGACGGACTGAATAGAGGTTTGCCTAAACTGGGGATTGGACGAAGTCGTGGCAGTGTTGGTTCTGACAACGGAAATGAGAGTAAAGGAGGAAAGAGCATCCAGACCAAACAATGTGGAACTCTAGACTTCTGA 1053 0.4834 MEGERKRGARVCCVCNKARASVKRPKTLEHICRECFYDAFEAEIHRVIVENQLFRPGERVAIGASGGKDSTVLAYVLSKLNRLHNYGLHLFLLSVDEGITGYRDDSLQTVHRNQIQYGLPLTVVSYKDLYGWTMDQIVSLIGFKNNCTFCGVFRRQALDRGAALLKVDKLVTGHNADDIAETVLLNLVRGDVARLSRCTSITTGEDGPIPRCKPFKYAYEKEIVMYAYFKRLDYFSTECIYSPNAYRGFAREFIKDLERIRPRAILDIIKSGENFRISTTTKMPEQGTCERCGYISSQKWCKACVLLDGLNRGLPKLGIGRSRGSVGSDNGNESKGGKSIQTKQCGTLDF 350
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu1g4251 350 CDD Alpha_ANH_like_II 59 245 - -
Ssu1g4251 350 PIRSF ATPase_YdaO 8 319 IPR035107 GO:0008033
Ssu1g4251 350 SUPERFAMILY Adenine nucleotide alpha hydrolases-like 45 276 - -
Ssu1g4251 350 MobiDBLite consensus disorder prediction 323 350 - -
Ssu1g4251 350 Gene3D HUPs 11 329 IPR014729 -
Ssu1g4251 350 Pfam Zinc-ribbon 287 317 IPR032442 -
Ssu1g4251 350 TIGRFAM TIGR00269: TIGR00269 family protein 209 308 IPR000541 GO:0000049|GO:0002098|GO:0034227
Ssu1g4251 350 Hamap Cytoplasmic tRNA 2-thiolation protein 1 [CTU1]. 10 322 IPR000541 GO:0000049|GO:0002098|GO:0034227
Ssu1g4251 350 Pfam PP-loop family 60 247 IPR011063 -
Ssu1g4251 350 MobiDBLite consensus disorder prediction 325 350 - -
Ssu1g4251 350 PANTHER CYTOPLASMIC TRNA 2-THIOLATION PROTEIN 1 11 342 IPR000541 GO:0000049|GO:0002098|GO:0034227
Ssu1g4251 350 PANTHER ATPASES OF THE PP SUPERFAMILY-RELATED 11 342 - -
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu1g4251 K14168 - gmx:100816096 667.922