Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu1g4250 ATGTCAATCTTGTCCATTTCGCCACCAATCTACCGTTGTTCTTAcacttcaatttcaatttctcgCCTGCCATGTGCTCAGCCACTGCAAGGAAGACGAAAAGCAAAAGGGAAAGGGGTGGTTGTAATGAGTATGGAGGCAGGTATTGGAGTGATGGGCACCAAATTGGGTATGATGAGCTATTTCGAACCTGACGGAGAGGTTGTTCCTGTCACTGTCGTGGGTTTCAAAGAAGGGAACATCGTCACCCAGTTCAAAACTGACGCCACCGATGGCTACAACGCCGTCCAGGTTGGTTACAGAAGGGTCAGAGACCGCAAATTGACCAAACCCGAAATCGGTCATCTCCAGAAAGTGGGTGCCATTCCCATGCGCCATCTTCAGGAGTTTCGTCTTCAAACCGTCGATGGCTTCGACCTTAACCAACGCCTTGTTTTTCATGAAATCTTCAACGAGGGTGATCTTGTTGATGTCTCTGGCACCACCATTGGCAAGGGTTTCCAAGGTGGAATCAAGCGTCATAACTTCAAAAGGGGTCCAATGTCCCACGGTTCTAAGAGTCATAGACAACTAGGATCTATTGGTGCTGGAACTACACCTGGTCGTGTGTACAAGGGAAAGAAGATGCCTGGTAGGATGGGAGGAACCAAGAGGAAGATAAGAAAGCTTAAGATTGTCAAAATCGATAAAGATCTTAATGTGGTCATTATCAAAGGTGCTGTCCCTGGTAAGCCAGGAAATCTTCTGCGGATAACTCCAGCCAAGATTGTCGGAAAGAACATTCCAAAGAATTAG 795 0.4591 MSILSISPPIYRCSYTSISISRLPCAQPLQGRRKAKGKGVVVMSMEAGIGVMGTKLGMMSYFEPDGEVVPVTVVGFKEGNIVTQFKTDATDGYNAVQVGYRRVRDRKLTKPEIGHLQKVGAIPMRHLQEFRLQTVDGFDLNQRLVFHEIFNEGDLVDVSGTTIGKGFQGGIKRHNFKRGPMSHGSKSHRQLGSIGAGTTPGRVYKGKKMPGRMGGTKRKIRKLKIVKIDKDLNVVIIKGAVPGKPGNLLRITPAKIVGKNIPKN 264
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu1g4250 264 TIGRFAM L3_bact: 50S ribosomal protein uL3 50 251 IPR019927 GO:0003735|GO:0005840|GO:0006412
Ssu1g4250 264 ProSitePatterns Ribosomal protein L3 signature. 150 173 IPR019926 -
Ssu1g4250 264 Gene3D Translation factors 176 256 - -
Ssu1g4250 264 SUPERFAMILY Translation proteins 49 260 IPR009000 -
Ssu1g4250 264 Pfam Ribosomal protein L3 142 230 IPR000597 GO:0003735|GO:0005840|GO:0006412
Ssu1g4250 264 PANTHER 50S RIBOSOMAL PROTEIN L3 43 263 IPR019927 GO:0003735|GO:0005840|GO:0006412
Ssu1g4250 264 Hamap 50S ribosomal protein L3 [rplC]. 48 255 IPR019927 GO:0003735|GO:0005840|GO:0006412
Ssu1g4250 264 MobiDBLite consensus disorder prediction 169 216 - -
Ssu1g4250 264 Gene3D - 81 138 - -
Ssu1g4250 264 PANTHER 50S RIBOSOMAL PROTEIN L3-1, CHLOROPLASTIC 43 263 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu1g4250 Ssu-Chr1 103015153 103016477 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu1g4250 K02906 - gmx:100802392 451.055