Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu1g4249 ATGACGATCCATTCGATCGTGATACAGAAGCTGCTGAGCACGAATGCTCAGGTGGGTCGGCGAGTTGCCGCTCACCATTTCAAGGTCTACACGTATGGCTTCCGCAACAAAATGGCCATAATCGATTCCGACAAGACCTTGATTTGCATGCGCAGCGCGTGCAACTTCATGGCTTCCCTCGCCCGCGAAAACGGTCGCTTCATGTTCATCAACACCAACCCTCTCCTGGACGACATCTTCGACCTCATGACCAAGAAGGTCGGCTCCTACAGCCCCTCCACCAACGCTCTCTGGCGCACCGGCGGCTTCTTGACCAACAGCTACAGTCCCAAGAAGTTCCGCTCTCGCAACAAGAAGCTCGTCTTTGGCCCCACCCAGCCTCCCGATTGCATCGTCATTGTCGACACCGACCGAAAGTCTTCCGTCATCAACGAGGCTTTCAAGCTTCAAATTCCCGTTGTCGCCTTGGTCGACTCCGCCATGCCCCTCGATGTCTATAACCGCATTGCTTATCCTGTTCCCGCCAATGATTCTGTTCAATTCGTTTATTTGTTCTGTAATTTGATTACCAAAACATTGCTTCGCGAGAAAAGCAAGGCTGCTGCTAATCCCAAAATTGATGCACGAGAAGAAGCTCCGCGCAAGGACAAGGCCAAGAGCAAGAGCGATTTGGCTAACGTCGGCATAACCGTAGTTCCCTATGCTAGTTTAGCTCCCCTACCGGAACAAGATATAGAGGAAACGAAGAAGCTTTTGGACAAGCTTGTTGTTTTGAAGTTCAATGGTGCCCCGGCAAGAAATATGGGTTTTGAGGGTCCCAAATCTGCAATTGATATTAGTGATGGACTGACATTTATGGACTTGATCATTAACCAGATTGAGACCATCAACTCCAAGTATGGATGCAGGGTTCCATTGCTTCTTTTCAACAAAGATGACCTTCATGATAGTTCTCGAAAGgttttggaaaaatattcaaaatcaagCGTTGAAGTGCATACTTTTAAACAGGGTGACGGTCCAGAGTTGAAATTATCAGGTGGACATTACAGCAAGGAGGAAGTGCATCCAGTTGATGATGTTGATGTGTTCCGTTCACTAATGACTGGTGGAACCCTTGATTCATTATTGTCACAGGGTAAGGAGTATATCCTAGTGTTGAAGTCAGACAATGTGGCAACAATCATTGATCCCAACATACTAAATCATTTGATGATAAATGATATTGAATATTGCATGGAGgtGACACCAAgccattcatttaatttaatcttaacttcaatgaattttaagCTTCGGGAGATTGCTCAAAACCAAGATAAACATTTGAAGGACAGTTTCAAACTCATTGATACAACAAACATGTGGGTGAGTTTAAGAGCCATCAAGAAGTTTGTTGACCCTGATGAACTAAAGCACAAGAAGCCCTCAGTTTTGAAGGACACAGCAGCTGGACAGGCTATACAGTGCTTTGATAATGTGATTGGTGTCTCCGTGCCTGAATCTCGCTTTCTTCCCTTGGATGCAACATCGGATCTATTACTTCTTCAGTCAGATCTATACACTTGTAGAGAAGGTGTTTTAACTCGTAATCCAGCTAGAACTAACCCTTTAAATCCTGTGATAGACTTGGGACCTGAATTTGAAAAGGTTGGTGACTTCCAAAGTCGCTTCAGATCCATTCCAAGCATCATTGAGCTGGATAGTTTGATGGTGAGGGGTGATGTGTGGTTTGGaactaatattactttaaagGGGCAAGTGACTATTGCTGCAAAACCTGGCTTGAAATTGGAAATTCCAGATGGGGTGATAATTGAGAATAAGGAGATCAACGACCCTGCAGATATCTGA 1854 0.4369 MTIHSIVIQKLLSTNAQVGRRVAAHHFKVYTYGFRNKMAIIDSDKTLICMRSACNFMASLARENGRFMFINTNPLLDDIFDLMTKKVGSYSPSTNALWRTGGFLTNSYSPKKFRSRNKKLVFGPTQPPDCIVIVDTDRKSSVINEAFKLQIPVVALVDSAMPLDVYNRIAYPVPANDSVQFVYLFCNLITKTLLREKSKAAANPKIDAREEAPRKDKAKSKSDLANVGITVVPYASLAPLPEQDIEETKKLLDKLVVLKFNGAPARNMGFEGPKSAIDISDGLTFMDLIINQIETINSKYGCRVPLLLFNKDDLHDSSRKVLEKYSKSSVEVHTFKQGDGPELKLSGGHYSKEEVHPVDDVDVFRSLMTGGTLDSLLSQGKEYILVLKSDNVATIIDPNILNHLMINDIEYCMEVTPSHSFNLILTSMNFKLREIAQNQDKHLKDSFKLIDTTNMWVSLRAIKKFVDPDELKHKKPSVLKDTAAGQAIQCFDNVIGVSVPESRFLPLDATSDLLLLQSDLYTCREGVLTRNPARTNPLNPVIDLGPEFEKVGDFQSRFRSIPSIIELDSLMVRGDVWFGTNITLKGQVTIAAKPGLKLEIPDGVIIENKEINDPADI 617
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu1g4249 617 Pfam Ribosomal protein S2 126 193 IPR001865 GO:0003735|GO:0005840|GO:0006412
Ssu1g4249 617 Pfam Ribosomal protein S2 11 108 IPR001865 GO:0003735|GO:0005840|GO:0006412
Ssu1g4249 617 PANTHER - 1 617 IPR016267 GO:0003983|GO:0006011
Ssu1g4249 617 PANTHER UTP-GLUCOSE-1-PHOSPHATE URIDYLYLTRANSFERASE 1 617 - -
Ssu1g4249 617 Gene3D - 2 195 - -
Ssu1g4249 617 CDD RPS2 11 195 IPR001865 GO:0003735|GO:0005840|GO:0006412
Ssu1g4249 617 SUPERFAMILY Nucleotide-diphospho-sugar transferases 240 593 IPR029044 -
Ssu1g4249 617 Gene3D Hexapeptide repeat proteins 508 617 - -
Ssu1g4249 617 Pfam UTP--glucose-1-phosphate uridylyltransferase 231 585 IPR002618 GO:0070569
Ssu1g4249 617 SUPERFAMILY Ribosomal protein S2 8 204 IPR023591 -
Ssu1g4249 617 Gene3D Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A 196 507 IPR029044 -
Ssu1g4249 617 PRINTS Ribosomal protein S2 signature 128 145 IPR001865 GO:0003735|GO:0005840|GO:0006412
Ssu1g4249 617 PRINTS Ribosomal protein S2 signature 169 183 IPR001865 GO:0003735|GO:0005840|GO:0006412
Ssu1g4249 617 PRINTS Ribosomal protein S2 signature 145 156 IPR001865 GO:0003735|GO:0005840|GO:0006412
Ssu1g4249 617 PRINTS Ribosomal protein S2 signature 8 26 IPR001865 GO:0003735|GO:0005840|GO:0006412
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu1g4249 Ssu-Chr1 102999018 103013462 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu1g4249 K00963 - gmx:100812583 1028.47