Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu1g4241 ATGGCTGTTTCGGCTATCGCAGGAGCGAGGCTAACCCTCGGGATGCCCCTTTCCTTTCCCACACCCGCACGCATTCGAACTTCTCCTTTCGTCACAATGGCCGTATCCGTCGATAACAAGACCGACAACAAACTCACTCTTACCAAGTCCGAGGAAGCTTTTGCTGCTGCCAAGGAGCTGATGCCTGGAGGTGTGAACTCTCCAGTTCGTGCCTTCAAATCGGTGGGCGGTCAACCAATTGTGATTGATTCAGTGAAGGGGTCTCATATGTGGGACATCGATGGCAATCACTACATTGACTACGTCGGTTCTTGGGGTCCTGCAATTATTGGTCACGCCGATGATCAGGTGCTTGCAGCTTTGGGTGAAACCATGAAGAAAGGAACCAGCTTTGGTGCACCCTGTGAGCTGGAAAACGATTTGGCGAAGCTGGTTATCGATGCCGTCCCGAGCATTGAAATGGTTCGGTTTGTCAATTCAGGCACAGAAGCTTGCATGGGTGCGCTCCGTCTGGCGCGTGCTTATACCAGAAGAGAGAAGATCATCAAGTTTGAGGGGTGTTACCATGGCCACGCGGATCCTTTTCTTGTCAAGGCGGGTAGTGGAGTTGCCACTTTAGGACTTCCTGATTCCCCTGGTGTCCCCAAAGCTGCCACTTATGAAACACTTACAGCCCCCTACAATGACATCTTGGCCGTTGAGAAGCTCTTTGAGTCTAACAAAGGAGAAATTGCCGCGGTTTTCCTCGAACCTGTTGTTGGAAATGCAGGTTTCATTGTTCCTAAACCtgaatttcttaatttcttgcGAAAAATCACCAAGGAGAACGACACCCTTCTTGTGTTTGATGAAGTTATGACCGGATTTCGTTTGTCATATGGAGGTGCTCAAGAGTATTTTGGCATAACTCCGGATATAACAACCCTAGGAAAGATCATTGGTGGAGGTCTGCCAGTAGGCGCTTATGGAGGGAGGAAGGAGATCATGAAGATGGTGGCACCGGCTGGACCGATGTACCAGGCTGGGACCTTGAGTGGGAACCCTTTGGCCATGACTGCAGGCATACAGACACTGCTGCGTATTAAGGAGCCAGGAACTTACCAGTACTTGGACAAAATCACAGGAGAGCTTGTTCAAGGCATCATTGAAGTTGGGAAGAGGGCAGGTCATGCAATATGTGGTGGGCACATAAGTGGGATGTTTGGGTTTTTCTTCACAGAAGGACCTGTGTATAATTTTGAAGATGCCAAGAAGAGTGACACGGCCAAGTTTGCTAGGTTCTTTTGGGGAATGTTGGCGGAGGGTGTCTATTTGGCACCTTCGCAGTTTGAGGCTGGCTTCACCAGCTTGGCACATACTTCTGATGACATAAAAAAGACAATAGCCGCTGCCGAGAAGGTTTTCAGGGAGATTTGA 1416 0.4894 MAVSAIAGARLTLGMPLSFPTPARIRTSPFVTMAVSVDNKTDNKLTLTKSEEAFAAAKELMPGGVNSPVRAFKSVGGQPIVIDSVKGSHMWDIDGNHYIDYVGSWGPAIIGHADDQVLAALGETMKKGTSFGAPCELENDLAKLVIDAVPSIEMVRFVNSGTEACMGALRLARAYTRREKIIKFEGCYHGHADPFLVKAGSGVATLGLPDSPGVPKAATYETLTAPYNDILAVEKLFESNKGEIAAVFLEPVVGNAGFIVPKPEFLNFLRKITKENDTLLVFDEVMTGFRLSYGGAQEYFGITPDITTLGKIIGGGLPVGAYGGRKEIMKMVAPAGPMYQAGTLSGNPLAMTAGIQTLLRIKEPGTYQYLDKITGELVQGIIEVGKRAGHAICGGHISGMFGFFFTEGPVYNFEDAKKSDTAKFARFFWGMLAEGVYLAPSQFEAGFTSLAHTSDDIKKTIAAAEKVFREI 471
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu1g4241 471 Hamap Glutamate-1-semialdehyde 2,1-aminomutase [hemL]. 49 471 IPR004639 GO:0033014|GO:0042286
Ssu1g4241 471 Gene3D - 115 363 IPR015421 GO:0003824
Ssu1g4241 471 PANTHER GLUTAMATE-1-SEMIALDEHYDE 2,1-AMINOMUTASE 30 469 - -
Ssu1g4241 471 ProSitePatterns Aminotransferases class-III pyridoxal-phosphate attachment site. 280 316 IPR005814 GO:0008483|GO:0030170
Ssu1g4241 471 Gene3D Aspartate Aminotransferase, domain 1 52 464 IPR015422 GO:0003824
Ssu1g4241 471 PANTHER BNAA09G06670D PROTEIN 30 469 - -
Ssu1g4241 471 CDD OAT_like 54 468 IPR005814 GO:0008483|GO:0030170
Ssu1g4241 471 Pfam Aminotransferase class-III 79 388 IPR005814 GO:0008483|GO:0030170
Ssu1g4241 471 SUPERFAMILY PLP-dependent transferases 47 470 IPR015424 -
Ssu1g4241 471 TIGRFAM hemL: glutamate-1-semialdehyde-2,1-aminomutase 49 470 IPR004639 GO:0033014|GO:0042286
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu1g4241 Ssu-Chr1 102881334 102883046 Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu1g4241 K01845 - gmx:547795 847.04