Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu1g4239 ATGGAGTTGGCACAACTAGAAGCATTGTGTGAGAGGCTGTACAATTCACAGGACTCGGTGGAACGTGCTCACGCGGAGAACACACTGAAATGCTTCTCCATGAACACTGAATACATTTCCCAATGCCAATATATTCTCGATCATGCCTTGACACCCTATGCATTGATGCTAGCTAGTTCCAGTTTGTTGAAACAAGTCACCGAACATAGCCTTGCCTTGAAGCTTCGCCTTGATATATGGACCTATCTCATAAACTATCTAGCGACCAGAGGACCCGAGTTACAGCCCTTTGTGACTGCTTCTTTGATCCAACTTTTGTGTCGAGTCACAAAGTTCGGATGGTTTGATGATGACCGATTCCGGGACCTGGTCAAAGAATCCATGAACTTCTTGAGTCAGGCAACGCCGGGTCATTATGCCATTGGTTTGAAGATCCTAAGTCAGCTTATCTCTGAGATGAATCAGGCTAATGCTGGTATGCCTGCCACAAATCATCGAAGGGTTGCTTGCTCCTTTAGGGACCAATATCTTTTTCAGATATTTCAGATATCTTTAACATCATTGGGTCAACTGAAGAATGATGTTGTCAATCAATTGCAAGAATTGGCTCTTGCTCTTTCTTTGAAATGTTTATCATTTGATTTTGTGGGGACATCGGTTGATGAAAGTTCAGACGAGTTTGGCACAGTTCAGATTCCATCACCTTGGAAGCCTGTTTTGGAGGATTCTTCAAcactacaaatattttttgattactATGCCATTACAAAGCCTCCTCTTTCAAAGGAGgCACTGGAGTGCTTGGTGCGACTAGCGTCTGTAAGACGTTCTTTGTTTACAAATGATGCTGCCCGTTCTAAATTTTTGGCCCATTTAATGACAGGAACCAAAGTAATCCTGCAAACAGGGCAAGGTCTTGCAGATCATGATAATTACCATGAGTTTTGTCGTCTTCTTGGTCGGTTCAGAGTGAATTATCAGTTGTCAGAGCTTGTTAATGTGGAAGGCTACAGTGATTGGATACGTTTGGTTGCAGAGTTTACTCTCAAATCTTTGCAATCATGGCAGTGGGCAAGCAATAGTGTGTACTACCTGTTAGGGCTGTGGTCTAGATTGGTGTCTTCTGTTCCATATTTAAAAGGTGATGCACCAAGCTTACTGGATGAATTTGTTCCCAAGATTACTGAAAGTTTCATCACATCAAGATTCAACTCTGTGCAGGCTGGATTACCTGATGATCTTTCTGAGAACCCCTTGGACAATGCTGAACTTCTTCAGGATCAATTAGACTGCTTCCCATACCTATGTAGATTTCAGTATGAAAGCAgtagtttatttataataaacataatggaGCCAGTCCTGCAAATATACACGGAAAGAGCAAGATTACATGTTCCTGATAACAGTGATCTCACTGTGATTGAAGATAAACTTGCTTGGATTGTTCATATCATTGCTGCAATTCTTAAGATAAAACAATGCACTGGTTGTAGTATGGAATCCCAGGAAGTGCTTGATGCTGAACTTTCAGCTCGGGTTTTACAGTTGATAAATGTAACCGACAGTGGAATACACAGTCAGAGATATGGTGAGATAAGCAAACAAAGACTAGATAGGGCAATTCTTACTTTCTTTCAGCATTTCCGAAAGTCTTATGTAGGAGATCAGGCTATTCATTCTTccaagCAGTTATACGCCCGGTTATCTGAACTTCTTGGCCTACATGATCATCTATTACTGTTGAATGTGATTATTGGCAAGATTGTGACTAACCTCAAGTGCTACACAGAGAGTGAAGAGGTCATTGACCACACCTTGAGTTTGTTTTTGGAGCTTGCATCCGGCTACATGACTGGAAAGCTACTTCTGAAGTTGGACACAGTGAAATTTATTGTTGCCAATCATACGAGGGaacattttccatttttggAAGCAAAGAGATGCACTCGTAGCAGAACGACTTTCTATTACACTATTGGTTGGTTGATATTCATGGAGGATAGCCCTGTGAAGTTTAAATCATCAATGGATCCACTACAGCAGgtttttctcaGTTTGGAATCAACTCCTGATTCAGTATTTCGAACAGATGCTGTAAGGTATGCACTTGTTGGTTTGATGAGGGACCTCAGAGGAATTGCAATGGCCACAAACAGCCGCCGAACATATGGATTTCTATTTGATTGGTTGTATCCTGCACACATGCCTCTACTCTTAAAGGGCATCTCTCATTGGACAGACACCCCAGAGGTTACCACCCCTTTGTTAAAGTTCATGGCTGAGTTTGTGCTAAATAAAGCTCAACGTTTGACATTtgactcttcttcaccaaatggCATACTTCTCTTCCGGGAAGTCAGTAAACTGATTGTTGCTTATGGATCTAGAGTTCTGTCTCTTCCAAATGCTGCTGATATTTATACGTACAAGTACAAAGGAATATGGATTTGTTTAACAATACTGTCAAGAGCCCTTTCAGGAAATTATGTCAACTTTGGTGTGTTTGAACTATATGGTGACAGAGCTCTATCTGACGCTCTTGATGCTGCTCTAAAGATGACACTGTCAATTCCTATGTCTGATATATTGGCTTATAGGAAGCTAACAAGGGCGTATTTTGCATTCTTGGAGGTTTTGTTCAACAGCCACATCACTTTCGTATTAAACTTGGACACGAACACCTTTATGCATATAGTTGGCTCCCTTGAATCTGGACTTAAAGGGTTGGATACAAGTATCTCATCACAGTGTGCATCTGCTGTTGATAATTTGGCTGCTTTCTATTTTAACAACATCACTATGGGAGAGGCTCCAAATTTACCTGCATCTGTCAATCTTGCTCATCATATTGCAGAGTGTCCCAATCTGTTTCcagaaATTTTGAAGACCCTATTTGAGATCATATTGTTTGAAGACTGTGGCAACCAATGGAGTCTGAGTAGGCCAATGTTGAGCTTGATACTCATTAATGAGCAGATATTCTCAGATCTGAAAGCTCAAATCTTGTCATCACAGCCAATGGATCAGCATCAGCGGCTTTCTTCATGCTTCGATAAACTCATGGCAGATGTTACTCTAAGCATAGATTCAAAAAACAGGGATAAGTTTACTCAGAATCTCACCATATTTCGGCATGAGTTCCGTgccaaataa 3156 0.3983 MELAQLEALCERLYNSQDSVERAHAENTLKCFSMNTEYISQCQYILDHALTPYALMLASSSLLKQVTEHSLALKLRLDIWTYLINYLATRGPELQPFVTASLIQLLCRVTKFGWFDDDRFRDLVKESMNFLSQATPGHYAIGLKILSQLISEMNQANAGMPATNHRRVACSFRDQYLFQIFQISLTSLGQLKNDVVNQLQELALALSLKCLSFDFVGTSVDESSDEFGTVQIPSPWKPVLEDSSTLQIFFDYYAITKPPLSKEALECLVRLASVRRSLFTNDAARSKFLAHLMTGTKVILQTGQGLADHDNYHEFCRLLGRFRVNYQLSELVNVEGYSDWIRLVAEFTLKSLQSWQWASNSVYYLLGLWSRLVSSVPYLKGDAPSLLDEFVPKITESFITSRFNSVQAGLPDDLSENPLDNAELLQDQLDCFPYLCRFQYESSSLFIINIMEPVLQIYTERARLHVPDNSDLTVIEDKLAWIVHIIAAILKIKQCTGCSMESQEVLDAELSARVLQLINVTDSGIHSQRYGEISKQRLDRAILTFFQHFRKSYVGDQAIHSSKQLYARLSELLGLHDHLLLLNVIIGKIVTNLKCYTESEEVIDHTLSLFLELASGYMTGKLLLKLDTVKFIVANHTREHFPFLEAKRCTRSRTTFYYTIGWLIFMEDSPVKFKSSMDPLQQVFLSLESTPDSVFRTDAVRYALVGLMRDLRGIAMATNSRRTYGFLFDWLYPAHMPLLLKGISHWTDTPEVTTPLLKFMAEFVLNKAQRLTFDSSSPNGILLFREVSKLIVAYGSRVLSLPNAADIYTYKYKGIWICLTILSRALSGNYVNFGVFELYGDRALSDALDAALKMTLSIPMSDILAYRKLTRAYFAFLEVLFNSHITFVLNLDTNTFMHIVGSLESGLKGLDTSISSQCASAVDNLAAFYFNNITMGEAPNLPASVNLAHHIAECPNLFPEILKTLFEIILFEDCGNQWSLSRPMLSLILINEQIFSDLKAQILSSQPMDQHQRLSSCFDKLMADVTLSIDSKNRDKFTQNLTIFRHEFRAK 1051
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu1g4239 1051 PANTHER EXPORTIN 4,7-RELATED 3 1051 IPR044189 GO:0005049|GO:0051169
Ssu1g4239 1051 Gene3D - 829 1050 IPR011989 -
Ssu1g4239 1051 Gene3D - 1 614 IPR011989 -
Ssu1g4239 1051 PANTHER BNAA10G30440D PROTEIN 3 1051 - -
Ssu1g4239 1051 Coils Coil 3 23 - -
Ssu1g4239 1051 SUPERFAMILY ARM repeat 1 1036 IPR016024 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu1g4239 Ssu-Chr1 102838376 102868978 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu1g4239 K18460 - gmx:100804346 2039.23