Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu1g4227 ATGGATCGGATCAATATTCTTTTCATCACCTTGCTTTCCATCACCATTGCCGCTGCACATGCAGACGGTAATCAGGATAAGCATGGTCGTCATATGTCCGCTAACAATGTCACTTACGACGGTAAGTCACTCTTTATCGACGGAAGGCGCGAGATCCTCTTCTCCGGTTCCATCCATTACACACGAAGCACCCCAGATATGTGGCCTGAcattcttgaaaaagcaagacGCGGAGGCTTGAACGTCATTCAAACTTACGTGTTCTGGAACGCTCACGAGCCAGTGCAAGgcaagTTCAACTTCAAAGGCAATTATGATCTGGTGAAGTTCATTAAGCTCGTTCAAGCCAAGGGAATGTTTGTCACCCTCAGGGTTGGGCCTTTCATCCAAGCAGAGTGGAACCATGGAGGACTTCCATATTGGCTTAGAGAGGTGCCGGGTATCATATTCCGTTCGGACAATGAGCCCTACAAGAAACACATGCAAGCATTCGTGACGAAGATTGTACAAATGATGAAAGAAGAGAAGCTCTTTGCTCCCCAAGGAGGCCCCATCATCTTGGCTcagATTGAGAACGAGTACAACCATGTTCAACGTGCATACAGACAGGGGGGAGACAGATACGTCCAATGGGCCGCAAATATGGCAGTGGCATTGCATACTGGAGTTCCATGGATCATGTGCAAGCAGAAGGATGCCCCTGATCCAGTGATCAACGCATGCAATGGAAGACACTGTGGTGATACCTTCTCGGGCCCAAACAAACCATACAAACCAGCCATATGGACTGAGAACTGGACCGTTCAGTACAAAGTAAATGGAGATCCACCATCCCGCAGATCCGCAGAAGACATTGCCTTCTCAGTTGCCCGCTTCTTCtccaaaagtggaaatttggCTAACTACTATATGTACCATGGTGGAACAAACTTTGGTAGAACAACCTCTGCCTTTACAACAACCAGTTATTACGATGAGGCACCTCTTGATGAGTACGGTCTGCAGAGAGAACCAAAATGGAGTCACCTGAGGGACGTGCACAAAGCTTTGCTCCTTTGCAGGAGGTCTATCCTTGGTGGCAATCCCACTGTCCAAAAGTTGAACAATTTTCATGAGATAAGAACCTATGAGAAGCCTGGATCTGACATATGTGCTGCTTTCATCGCTAACAACCATACCACCGAGCCAGCCACCATTAACTTCAGAGGCACAAACTATTATTTGCCTCCACATTCCATTAGCATCCTCCCCGATTGCAAGACCGTGGTCTTCAACACCCAACGTATTGTTTCACAACATAATGAAAGGAACTATGTGAGGTCAGCCACTGCAAACAAGTTTCAGTGGGAGATGTTTAATGAGGCCATTCCAACGACCAAGAAAATGCAAATAAACCAGAAACGTCCTGTAGAGCTTTACAGCTTGCTTAAAGACACCACCGATTATGCTTGGTTCACCACCAGGTGA 1467 0.456 MDRINILFITLLSITIAAAHADGNQDKHGRHMSANNVTYDGKSLFIDGRREILFSGSIHYTRSTPDMWPDILEKARRGGLNVIQTYVFWNAHEPVQGKFNFKGNYDLVKFIKLVQAKGMFVTLRVGPFIQAEWNHGGLPYWLREVPGIIFRSDNEPYKKHMQAFVTKIVQMMKEEKLFAPQGGPIILAQIENEYNHVQRAYRQGGDRYVQWAANMAVALHTGVPWIMCKQKDAPDPVINACNGRHCGDTFSGPNKPYKPAIWTENWTVQYKVNGDPPSRRSAEDIAFSVARFFSKSGNLANYYMYHGGTNFGRTTSAFTTTSYYDEAPLDEYGLQREPKWSHLRDVHKALLLCRRSILGGNPTVQKLNNFHEIRTYEKPGSDICAAFIANNHTTEPATINFRGTNYYLPPHSISILPDCKTVVFNTQRIVSQHNERNYVRSATANKFQWEMFNEAIPTTKKMQINQKRPVELYSLLKDTTDYAWFTTR 488
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu1g4227 488 ProSitePatterns Glycosyl hydrolases family 35 putative active site. 182 194 IPR019801 GO:0004553|GO:0005975
Ssu1g4227 488 Gene3D Glycosidases 33 352 - -
Ssu1g4227 488 PRINTS Glycosyl hydrolase family 35 signature 47 64 IPR001944 GO:0004553|GO:0005975
Ssu1g4227 488 PRINTS Glycosyl hydrolase family 35 signature 68 86 IPR001944 GO:0004553|GO:0005975
Ssu1g4227 488 PRINTS Glycosyl hydrolase family 35 signature 261 276 IPR001944 GO:0004553|GO:0005975
Ssu1g4227 488 PRINTS Glycosyl hydrolase family 35 signature 298 313 IPR001944 GO:0004553|GO:0005975
Ssu1g4227 488 PRINTS Glycosyl hydrolase family 35 signature 123 142 IPR001944 GO:0004553|GO:0005975
Ssu1g4227 488 PRINTS Glycosyl hydrolase family 35 signature 180 195 IPR001944 GO:0004553|GO:0005975
Ssu1g4227 488 PRINTS Glycosyl hydrolase family 35 signature 317 333 IPR001944 GO:0004553|GO:0005975
Ssu1g4227 488 PANTHER GLYCOSIDE HYDROLASE FAMILY 35 PROTEIN 7 487 - -
Ssu1g4227 488 Pfam Glycosyl hydrolases family 35 43 349 IPR031330 -
Ssu1g4227 488 Pfam Beta-sandwich domain in beta galactosidase 358 429 IPR041392 -
Ssu1g4227 488 PANTHER BETA-GALACTOSIDASE RELATED 7 487 IPR001944 GO:0004553|GO:0005975
Ssu1g4227 488 SUPERFAMILY (Trans)glycosidases 35 353 IPR017853 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu1g4227 Ssu-Chr1 102658585 102661158 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu1g4227 33 487 Glycoside Hydrolase AT4G35010 63.816 0.0 647
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu1g4227 - - ccaj:109817195 873.618