Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu1g4225 ATGGAAAAGCTTCCTGGAACTTTCTCTAAGATGTTTGTCAGAGAAGGTGTAGTCCATGCAGTTGACCAACTTATTTTGGCTGGAAATTCAACCAATATATCTACACAAACATCATCTGCTGAGAAGGATACTGATTCTGTATCTGGAACTTCATCTCGCTCTAGGCGCTATCGCCTGCGCAGTGGCAATTCAATTCCCAATGCAAACCCGTTGGATGATTTGAAGAGTCCAGTTCCAGTAAATGTTGGTTTGCCACCAAGTTCTGTAGAAACTCCAACAACTAATTCTAGTATCCGTGCATCTGTTAGCTCAGTTGCTAAAGCTTTTAAAGACAAGTACTTTCCTTCTGATCCCGGTTCTGTTGAAGTGGGTGTTAGTGATGATCTTTTGCATCTGAAAAATCTCTGCACGAAGTTGAACACTGGTTTTGATGACCAAAGAACTAAGGCAAAGGGTAAAGTTAAAGCTTCTGGATTTGGTCTGGACAATAATTCTACTAACACAGAAGAGTATTTGATTGGGGTGATATCTGACATGCTAAAGGAACTTGGCAAAGGAGATGGTGTATCTACTTTTGAATTTATTGGTAGTGGTGTTGTTGAAGCCTTGctgaattatttttcttgtgggTATTTCTCTAAAGATCAAATCTCAGAAACCAGCCTCCCCAAGCTTCGCCAACAGGCACTTACAAGGTTCAAGTCATTTGTAGCTGTTGCACTACCTTTGACCATTGACAACGGGGCTGTTGCTCCTATGACTGTCTTGGTTCAGAAGCTTCAAAATGCTTTGTCCTCCTTGGAGCGTTTCCCTGTTATGCTGAGTAATTCACCTCGGTCATCTAGTGGAAGTGCACGTCTCTCCTCTGGGCTAAGTGCATTATCTCAGCCCTTAAAGTTGCGTCTCTGTCGAGCTCAGGGTGAAAAGTCACTTAGGGATTATTCATCCAATGTGGTACTGATTGATCCATTAGCAAGTTTAGCAGCCATCGAGGAATTTCTGTGGGCTCGTGTTCAGCGTGGTGAATCTGGTCAAAAGTCTACTGTAGCTACTGAGAATTCTGAATCTGGAACAGCTCCTGCAGGAGCAGGTGTTTCATCTCCTTCTCCTTATACTCCCTCCACTACCCGTCGTCATTCTACTAGATCCAGATCATCTGTTAATATAGGAGATACACCTAGAAAGGAAATACCTCAAGATAAAAGCATGAGCTCATCTAAGAGCAAGGGTAAAGCTGTATTAAAGCCTGCACAGGAGGAAGCACGAGGACCCCAAACAAGGAATGCTGTGCTCAGAAGAGCAGCACTTGATAAAGATGCTCAAATGAAGCCAGTAAATGGTGACTCAACTTCTGAGGATGAAGAATTGGATATATCTCCTGTTGAAATTGATGAGGCTTTGGTGATTGAAGATGATGATATTTCTGAGGATGACGATGAAGACCATGAAGATgTGCTGAGGGATGATTCGCTTCCTGTCTGCTTGCCTGACAAAGTACATGATGTGAAATTGGGCGACTCAGCTGAGGAGAGTACTGTTGCTCCAGCAGCAAGTGATAGCCAAACTAATGCAGCCTCAGGTTCTAGCAGCAAAGCTGGTACAGCCAGGGGATCTGACTCTGCTGATTTTAGGAGTGGGTATTCATCAAGCTCAAGGGGTGCAATGTCATTTGCTGCTGCTGCTATGGCTGGGCTTGGATATGCTAATAGCAGAGGTTTCAGGGGTGGCAGAGATAGGCATGGGCGCCTGTTGTTTGGTAGTTCTAATGATCCTCCAAAGTTGATTTTTACTGCTGGTGGGAAGCAGCTTAATAGGAATTTGACTGTATATCAGGCAATTCAAAGACAGCTTGTGCtagatgaagatgatgatgagaGATTTGCTGGCAGTGACTATGTATCCAGTGATGGAAGCAGTCTGTGGGGTGATATTTACACCATCACTTATAAAAGGGCAGAAAACCAGACAGATAAGGCCTCTACTGGAGGATCAAGTTCAAATACTTCAAAATCTGCCAAATCTGGGTCTGCCTCAAATTCCAGCGCAGAAGCTAAATTGTATCAGACATCTGTTCTAGACAGTATATTGCAGGGAGAATTGCCCTGTGATCTAGAGAAATCTAATCCTACCTACAATATTTTGGCACTTCTGCGTGTGCTGGAGGGTTTGAACCAGCTTGCACCTCGTTTGAGGGCCCAAATGGTTTCTTATAGCTTTGCTGAGGGAAAAATCTTGGATTTAGATGAGCTAGGTGTTACAACTGGTGCTAGGGTGCTTCCAGAGGAGTTCATAAGTGGTAAGCTTACTCCAAAATTGGCTAGGCAAATACAAGATGCCCTTGCGCTATGCAGTGGTAGTCTTCCCTTGTGGTGTTACCAGTTGACTAAAGCATGCCCTTTCTTGTTTCCTTTTGAGACCCGACGACAGTACTTTTATTCTACTGCATTTGGGTTATCTCGTGCTTTGTATCGACTTCAGCAGCAGCAAGGTGCTGATGGTCATGGATCAACAGCTGAGAGAGAGGTGAGAGTCGGGAGATTGCAGCGCCAAAAGGTTCGTGTCTCTCGAAATCGTGTTTTGGATTCTGCTGCAAAAGTTATGGAGATGTATTCTAGCCAAAAAGCTGTACTTGAAGTAGAATATTTTGGTGAAGTTGGCACTGGCCTGGGCCCCACCCTTGAGTTTTATACAATCCTAAGTCATGATTTGCAAAAAGTTGGATTGCAAATGTGGAGATCGTATTCTTCAGAGAAACATCAAATGGAAGTTGATGGcgatgaaaagaaaatgaaaagtagtGAAGGCTCTGGGCCTATTTTGGCTGGAGATGGAGAACTTGTTCAAGCTCCTCTGGGGTTGTTTCCTCGGCCTTGGCCTACAAATTCTCATGCATCAGAGGGTAGCCAGTTTTCAAAAGTCATTGAGTATTTTCGGCTGCTAGGTCGTGTTATGGCTAAAGCTCTTCAAGATGGACGACTATTGGATCTGCCGTTGTCGGTGGCATTTTATAAGCTTGTTCTTGGTCAAGATCTTGATTTGCATGACATTCTGTTCATTGATGCTGAGCTTGGGAAGACTTTGCAAGAGTTGAATGCCATTGTTTGTCGGAAACATTATATAGAATCTATTGGTGGTAGCTATACTGATACAATTGTTAACTTACATTTTCATGGTGCCTCGATTGAAGATCTTTGCTTAGATTTTACACTTCCTGGTTATCCTGAATACACCTTGAAACCAGGAGATGAAATTGTTGATATCAACAATTTGGAGGAGTACATATCCCTGGTGGTTGATGCAACTGTCAAGACTGGAATCACACAGCAAATAGAAGCATTTAGAGCTGGGTTTAACCAGGTTTTTGACATcttatctttacaaatttttactCCTCAAGAACTAGATAATTTGCTTTGTGGCCGCAGGGAGCTGTGGGAGGCTGAGACTCTTGCTGATCATATAAAATTCGACCACGGGTACACTGCAAAGAGCCCTGCCATTGTTAATTTACTTGAAATTATGGGAGAGTTCACACCGGAGCAGCAACGTGCTTTCTGTCAGTTTGTTACTGGTGCACCTAGGCTGCCACCTGGTGGGCTGGCAGTTCTAAATCCAAAACTAACAATTGTGAGGAAGCTTTCGTCAACTGCAATTAATACTTCTTCTAATGGGAATGGACATTCAGAATCAGCAGATGATGACTTGCCTAGTGTGATGACATGTGCTAATTACCTGAAGCTTCCTCCTTACTCTACCAAGGAAATTATGTACAACAAGCTACTCTATGCAATCAGTGAAGGCCAGGGATCCTTTGATTTATCATGA 3825 0.4254 MEKLPGTFSKMFVREGVVHAVDQLILAGNSTNISTQTSSAEKDTDSVSGTSSRSRRYRLRSGNSIPNANPLDDLKSPVPVNVGLPPSSVETPTTNSSIRASVSSVAKAFKDKYFPSDPGSVEVGVSDDLLHLKNLCTKLNTGFDDQRTKAKGKVKASGFGLDNNSTNTEEYLIGVISDMLKELGKGDGVSTFEFIGSGVVEALLNYFSCGYFSKDQISETSLPKLRQQALTRFKSFVAVALPLTIDNGAVAPMTVLVQKLQNALSSLERFPVMLSNSPRSSSGSARLSSGLSALSQPLKLRLCRAQGEKSLRDYSSNVVLIDPLASLAAIEEFLWARVQRGESGQKSTVATENSESGTAPAGAGVSSPSPYTPSTTRRHSTRSRSSVNIGDTPRKEIPQDKSMSSSKSKGKAVLKPAQEEARGPQTRNAVLRRAALDKDAQMKPVNGDSTSEDEELDISPVEIDEALVIEDDDISEDDDEDHEDVLRDDSLPVCLPDKVHDVKLGDSAEESTVAPAASDSQTNAASGSSSKAGTARGSDSADFRSGYSSSSRGAMSFAAAAMAGLGYANSRGFRGGRDRHGRLLFGSSNDPPKLIFTAGGKQLNRNLTVYQAIQRQLVLDEDDDERFAGSDYVSSDGSSLWGDIYTITYKRAENQTDKASTGGSSSNTSKSAKSGSASNSSAEAKLYQTSVLDSILQGELPCDLEKSNPTYNILALLRVLEGLNQLAPRLRAQMVSYSFAEGKILDLDELGVTTGARVLPEEFISGKLTPKLARQIQDALALCSGSLPLWCYQLTKACPFLFPFETRRQYFYSTAFGLSRALYRLQQQQGADGHGSTAEREVRVGRLQRQKVRVSRNRVLDSAAKVMEMYSSQKAVLEVEYFGEVGTGLGPTLEFYTILSHDLQKVGLQMWRSYSSEKHQMEVDGDEKKMKSSEGSGPILAGDGELVQAPLGLFPRPWPTNSHASEGSQFSKVIEYFRLLGRVMAKALQDGRLLDLPLSVAFYKLVLGQDLDLHDILFIDAELGKTLQELNAIVCRKHYIESIGGSYTDTIVNLHFHGASIEDLCLDFTLPGYPEYTLKPGDEIVDINNLEEYISLVVDATVKTGITQQIEAFRAGFNQVFDILSLQIFTPQELDNLLCGRRELWEAETLADHIKFDHGYTAKSPAIVNLLEIMGEFTPEQQRAFCQFVTGAPRLPPGGLAVLNPKLTIVRKLSSTAINTSSNGNGHSESADDDLPSVMTCANYLKLPPYSTKEIMYNKLLYAISEGQGSFDLS 1274
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu1g4225 1274 SMART hect_3 861 1274 IPR000569 GO:0004842
Ssu1g4225 1274 MobiDBLite consensus disorder prediction 451 485 - -
Ssu1g4225 1274 CDD HECTc 850 1269 IPR000569 GO:0004842
Ssu1g4225 1274 MobiDBLite consensus disorder prediction 506 545 - -
Ssu1g4225 1274 MobiDBLite consensus disorder prediction 342 490 - -
Ssu1g4225 1274 MobiDBLite consensus disorder prediction 34 97 - -
Ssu1g4225 1274 PANTHER HECT E3 UBIQUITIN LIGASE-RELATED 1 1274 - -
Ssu1g4225 1274 MobiDBLite consensus disorder prediction 656 679 - -
Ssu1g4225 1274 MobiDBLite consensus disorder prediction 342 392 - -
Ssu1g4225 1274 SUPERFAMILY Hect, E3 ligase catalytic domain 842 1267 IPR035983 GO:0004842
Ssu1g4225 1274 Pfam HECT-domain (ubiquitin-transferase) 947 1274 IPR000569 GO:0004842
Ssu1g4225 1274 Gene3D Hect, E3 ligase catalytic domain 1145 1272 - -
Ssu1g4225 1274 MobiDBLite consensus disorder prediction 513 545 - -
Ssu1g4225 1274 MobiDBLite consensus disorder prediction 34 70 - -
Ssu1g4225 1274 PANTHER E3 UBIQUITIN-PROTEIN LIGASE TRIP12 1 1274 IPR045322 GO:0006511|GO:0061630
Ssu1g4225 1274 Gene3D Hect, E3 ligase catalytic domains 791 1036 - -
Ssu1g4225 1274 ProSiteProfiles HECT domain profile. 974 1274 IPR000569 GO:0004842
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu1g4225 Ssu-Chr1 102629430 102635820 Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu1g4225 K10590 - gmx:100791450 2160.96