Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu1g4215 ATGACTAGTACGAAGCCGTTACCATCATCAATTAACGTTGCAAATGAATCAACTACTGATGGGCCCCTATATGACTCCACTGCCTACACTgagTGCAAAGAGAAGCCAGAGGAGCCACTTTATGGAGGAGGAGTTTTCAAGAGTGAGCATCAGTCTCTTCGTAGTATTAAAGACAGCATTGCCTCCTACGTTGTCAACAATAGCTATGTGCCTTCACTAGTTCTGTATAATCTCACTCAGGGCACAATTTACTCTTTTTCCGTATGGGTGAGAGTTAAAGATTCAAGTTCAGGTATGATAAGGGCCAGCCTGGAAACGGAGAAAGAGACATATGACTGCATTGGGACAGTTTCAGCCAAGCGTGGATGCTGGTCATTTCTGAAGGGTGGATTTGTTCTGGATTGGCCTTCAAATTTATCCATAATCTTCTTCCAGAACGCGGATGATAAAGATATCAATATAGATGTTGCTAGCCCATCACTCCAGCCATTTACTAAGGGGCAATGGAGAATCAATCAACAATATATAATCAATACTAAAAGAAAGCGTGCCGTCACTATTCATGTGTCAGATATTAACGGAAAGAGGTTGCAAGGAGCTTCCATCTGCGTAGAGCAAATCTCAAAAGACTTCCCTTTTGGATCTGCTATAGCAAAGACCGTTCTTGGTAACTTACCCTATCAGAATTGGTTTGTGAAGCGGTTCAATGCGGCAGTCTTTGAAAATGAGCTCAAATGGTACGCCACGGAACCTGATGAAGGCATGGTCAATTACACCATTTCAGACCAGATGCTGGAATTTGTTAGAACAAACAATATTATAGCCAGAGGGCACAACATATTTTGGGAAGACCCTAAATATACTCCTGCATGGGTTCTTAACCTTACTGGCATCCAGTTACAATCTGCTGTCAATTCCCGAATACACAGTCTCATGAGCCAATACAAAGATGATTTCATACACTGGGACGTCAGCAATGAAATGcttcattttgatttctatGAGCAAAAGCTTGGACCTGATGCCACATTGCATTTCTTTGAGACAGCACATGAATCAGATCCATTAGCAACCCTGTTTATGAATGACTTCAATGTTGTGGAAACATGCAGTGACGTAAATTCCACCGTGGACGCCTATATCTCACGGGTAAGAGAACTGCAACGAAATGGCATCTTTATGGATGGAATTGGCTTGGAGGGTCACTTCACAATACCCAATCCTCCCCTTATCAGAGCTATCCTAGACAAGTTGGCAACACTTGGCCTTCCCATTTGGCTTACTGAGGTTGATATAAGCAAGACACTTGATAGAGATGCACAGGCAAATTATTTGGAGGAGGTGTTGAGGGAAGGCTTCTCACATCCTTCTGTGAATGGGATAATGCTTTGGACCGCATTTCATCCAAACGGGTGCTACCAAATGTGCCTCACAGACAATAATTTCAAGAACCTCCCAGCAGGTGATGTGGTGGACAAACTTCTTGAAGAGTGGCAAACCGGTCGTGTAGAGGGAGTCACAGATGGGCACGGTTCCTATAGCTATTATGGCTTCTTAGGAGAATATAGAATTAGTGTCAAGTATGGCAACAGGACTACAAAGTCAACATTCTCCCTCTCTCGAGGTGAAGAAACTAGACATTTCACTATTACAATATGA 1659 0.425 MTSTKPLPSSINVANESTTDGPLYDSTAYTECKEKPEEPLYGGGVFKSEHQSLRSIKDSIASYVVNNSYVPSLVLYNLTQGTIYSFSVWVRVKDSSSGMIRASLETEKETYDCIGTVSAKRGCWSFLKGGFVLDWPSNLSIIFFQNADDKDINIDVASPSLQPFTKGQWRINQQYIINTKRKRAVTIHVSDINGKRLQGASICVEQISKDFPFGSAIAKTVLGNLPYQNWFVKRFNAAVFENELKWYATEPDEGMVNYTISDQMLEFVRTNNIIARGHNIFWEDPKYTPAWVLNLTGIQLQSAVNSRIHSLMSQYKDDFIHWDVSNEMLHFDFYEQKLGPDATLHFFETAHESDPLATLFMNDFNVVETCSDVNSTVDAYISRVRELQRNGIFMDGIGLEGHFTIPNPPLIRAILDKLATLGLPIWLTEVDISKTLDRDAQANYLEEVLREGFSHPSVNGIMLWTAFHPNGCYQMCLTDNNFKNLPAGDVVDKLLEEWQTGRVEGVTDGHGSYSYYGFLGEYRISVKYGNRTTKSTFSLSRGEETRHFTITI 552
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu1g4215 552 ProSiteProfiles Glycosyl hydrolases family 10 (GH10) domain profile. 198 494 IPR001000 GO:0004553|GO:0005975
Ssu1g4215 552 Pfam Glycosyl hydrolase family 10 206 465 IPR001000 GO:0004553|GO:0005975
Ssu1g4215 552 PRINTS Glycosyl hydrolase family 10 signature 357 368 IPR001000 GO:0004553|GO:0005975
Ssu1g4215 552 PRINTS Glycosyl hydrolase family 10 signature 319 330 IPR001000 GO:0004553|GO:0005975
Ssu1g4215 552 PRINTS Glycosyl hydrolase family 10 signature 275 287 IPR001000 GO:0004553|GO:0005975
Ssu1g4215 552 PRINTS Glycosyl hydrolase family 10 signature 390 402 IPR001000 GO:0004553|GO:0005975
Ssu1g4215 552 SUPERFAMILY (Trans)glycosidases 196 502 IPR017853 -
Ssu1g4215 552 SMART glyco_10 244 495 IPR001000 GO:0004553|GO:0005975
Ssu1g4215 552 PANTHER GLYCOSYL HYDROLASE FAMILY 10 PROTEIN 14 551 - -
Ssu1g4215 552 SUPERFAMILY Galactose-binding domain-like 77 155 IPR008979 -
Ssu1g4215 552 Gene3D Glycosidases 202 507 - -
Ssu1g4215 552 Gene3D - 47 158 - -
Ssu1g4215 552 PANTHER GLYCOSYL HYDROLASE 14 551 IPR044846 GO:0004553|GO:0005975
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu1g4215 Ssu-Chr1 102434468 102437789 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu1g4215 20 552 Glycoside Hydrolase AT4G38650 65.112 0.0 745
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu1g4215 - - gmx:100806005 997.267