Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu1g3746 ATGGGTAGTTCCAAGACAAGCACTGAGGTTACCGACAATTCCAATAGCAGCAGCAGCACTCAGACTGAAACTGACAATCATATCTCCGTTCCTCCCTACGCCGAAGGAGAAAAGGTCTTAGCCAACCACTCTGATTGCCTTTATGAAGCAAAGGTTAGGAAAGTTGAGTACAACCATAAAGGCTGGCAGTTCCTTGTTCATTATCTTgGTTGGAAGAAAAGTTGGGATGAATGGGTTGACATGGATCGTTTGATGAAACACACTGAGGAAAATATGCGCAAAAAACATGCCCTTGAAGAGAAGCATGGCAATGATAAGAATGCAAAAGTCCCACGTGGTTCTCTGGCTAAATCCAAGAGTACTAACGTTTCAAGAGGCAGGAAACGAAGGAATGAATCTGTCATCAAGAGAAAACCTGCAGTTGATCCTGACAAGCTTGTCAACATTCAAATTCCTCCAACACTAAAGAAACAATTAGTTGATGATTGTGAGTTTATTACCCATCTAGGCAAGCTCGTTAAACTTCCTCGCACTCCTAATGTGAATgacatattgaaaaattattttgattacagATTGAAGAAATGTGGCCCGATGGCTGATTCAGTGGAAGAAATTATGAAAGGATTGTGTTGTTACTTTGACAAAGTACTGCCAGTGATGCTCTTGTACAAGAACGAGCGCCAACAGTACCAAGAGGCTTGTCCAGCCAATGTCTTTCCTTCTGCTGTATATGGTGCTGAGCATTTGTTGCGTCTCTTTGttaAGTTGCCCGAGTTATTGTTTCACGCTAGCATTGAAGAGGAGACATTGATAGAACTTCAGGCACACTTACTTGACTTTCTCAGGTTCTTGCAAAAAAACCAAAGCGCATTCTTCCTTTCTACTTATCATGTTGCAGAACACATTGAGAACAGCACCAACAAACAAGTCGACTAG 939 0.4089 MGSSKTSTEVTDNSNSSSSTQTETDNHISVPPYAEGEKVLANHSDCLYEAKVRKVEYNHKGWQFLVHYLGWKKSWDEWVDMDRLMKHTEENMRKKHALEEKHGNDKNAKVPRGSLAKSKSTNVSRGRKRRNESVIKRKPAVDPDKLVNIQIPPTLKKQLVDDCEFITHLGKLVKLPRTPNVNDILKNYFDYRLKKCGPMADSVEEIMKGLCCYFDKVLPVMLLYKNERQQYQEACPANVFPSAVYGAEHLLRLFVKLPELLFHASIEEETLIELQAHLLDFLRFLQKNQSAFFLSTYHVAEHIENSTNKQVD 312
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu1g3746 312 Gene3D - 15 115 - -
Ssu1g3746 312 MobiDBLite consensus disorder prediction 1 30 - -
Ssu1g3746 312 Pfam MRG 135 297 IPR026541 -
Ssu1g3746 312 PANTHER MORTALITY FACTOR 4-LIKE PROTEIN 1 311 IPR008676 GO:0005634|GO:0006325|GO:0006355
Ssu1g3746 312 MobiDBLite consensus disorder prediction 1 28 - -
Ssu1g3746 312 CDD CBD_MSL3_like 37 93 - -
Ssu1g3746 312 PIRSF EAF3_MRG15 26 310 IPR008676 GO:0005634|GO:0006325|GO:0006355
Ssu1g3746 312 SMART chromo_7 47 100 IPR000953 -
Ssu1g3746 312 Gene3D MRG domain 143 310 IPR038217 -
Ssu1g3746 312 MobiDBLite consensus disorder prediction 97 137 - -
Ssu1g3746 312 PANTHER CHROMATIN-BINDING PROTEIN 1 311 - -
Ssu1g3746 312 Pfam RNA binding activity-knot of a chromodomain 35 84 IPR025995 -
Ssu1g3746 312 ProSiteProfiles MRG domain profile. 143 310 IPR026541 -
Ssu1g3746 312 SUPERFAMILY Chromo domain-like 29 167 IPR016197 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu1g3746 Ssu-Chr1 93941445 93945579 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu1g3746 K11339 - gmx:100777259 538.495
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu1g3746 1 93941445 93945579 Ssu1g3746 1 93941445 93945579 ECH