Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu1g3742 ATGATCTCAATCACTTCCACTGAATTGAACTACTTAGTCTTCCGCTACCTCCACGAATCAGGTTTTACTCATTCTGCATTTGCATTCGGGTATGAAGCAGGGATTGATAAAAGCAAAAGTGATGATCACGTGGTTCCACCTGGTGCTCTTGTTACTTTCATACAGAAAGGAATTCAATATCTTGAGCTGGAAGCGAACTTGAGTGGTCCTCTGGATCTTATTACAAAGGACCCAAATGAACTACACAATATAGTAAAAGCCAAAAAGGAAAATCTTCGTCAACATAAAgttgaatcaaataaaataacaaatgacTTGCGTCACGACAATGCAAGGAGGGAACATGTTCAGGaaacagagaaagagaggaaagaaaaggaaaatgaacaGATACTGGAAAAAATacggttagagaaagagaaggagcaACCAAAGGGTGAATATAAAGAAACACAACACACTGATCAAAGCCATACAGAGAAACATGAAGATAAGATTACTGTTGAAAATCTAGAAAATAGAGCACATGGAGGGCCTGAGCCAATGGAGATCTCCCAGAGCCCCATGTCGTCGCCTGATGATACTCCATGTGATgatgtaaaaattttgaaaggcCATACATCAGAGGTTTTTGCTTGTGCATGGAATCCATCAGCTCCACTTCTTGCGTCGGGGTCTGGAGATTCAACAGCTCGAATTTGGAAAATTGCTGATGAACCTTGTGACTCTAGTGTGCAAAATGAACCAGTAAATGTTGTGGTGCTACAGCACTTTAAAGAAAGCACCAATGAAAAAAGCAAGGATGTGACGACACTTGACTGGAATGGGGATGGAACACTATTGGCAACTGGTTCCTATGATGGCCAAGCAAGAATATGGAGTAGAGATGGGGAGTTGAATAGTACACTAAACAAGCACAAAGGTCCAATCTTTTCTCTAAAGTGGAACAAGAAGGGGGATTATCTTCTTAGTGGGAGTGTGGATAAGACTGCTATTGTATGGAATATAAAGACTGGGGGATGGAAACAACTATTTGAATTTCACActgGCCCAACTCTTGATGTTGATTGGCGAAACAATGTTTCATTTGCTACATGCTCCACGGATAAAATGATACATGTTTGCAAAATTGGAGAGAATAGACCAATCAAAACTTTCTCAGGGCATCAGGATGAAGTTAATGCCATTAAATGGGATCCAACAGGTTCTTTGCTAGCTTCGTGCTCCGACGATCACACTGCAAAAATATGGAGTCTAAAGCAGGACAACTTTTTGCATGATTTAAAGGAACATGTCAAGGGGATATATACAATCCGATGGAGCCCTACAGGCCCTGGTACCAACAGTCCCAATCGGCAGTTAGTGCTAGCAAGTGCCTCATTTGACTCAACAATAAAGCTATGGGATGTGGAACTAGGGAGTTTACTCTACAGCTTAAATGACCACAGGTGCAGAACTAAATCAACGTGCTTTACAAgcaaaatacacacacacaaacactcatacatatgcatatgtaaGAATGAATGGATGCATTTGTCCATTCCATGCTAA 1554 0.3739 MISITSTELNYLVFRYLHESGFTHSAFAFGYEAGIDKSKSDDHVVPPGALVTFIQKGIQYLELEANLSGPLDLITKDPNELHNIVKAKKENLRQHKVESNKITNDLRHDNARREHVQETEKERKEKENEQILEKIRLEKEKEQPKGEYKETQHTDQSHTEKHEDKITVENLENRAHGGPEPMEISQSPMSSPDDTPCDDVKILKGHTSEVFACAWNPSAPLLASGSGDSTARIWKIADEPCDSSVQNEPVNVVVLQHFKESTNEKSKDVTTLDWNGDGTLLATGSYDGQARIWSRDGELNSTLNKHKGPIFSLKWNKKGDYLLSGSVDKTAIVWNIKTGGWKQLFEFHTGPTLDVDWRNNVSFATCSTDKMIHVCKIGENRPIKTFSGHQDEVNAIKWDPTGSLLASCSDDHTAKIWSLKQDNFLHDLKEHVKGIYTIRWSPTGPGTNSPNRQLVLASASFDSTIKLWDVELGSLLYSLNDHRCRTKSTCFTSKIHTHKHSYICICKNEWMHLSIPC 517
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu1g3742 517 Gene3D - 192 504 IPR015943 GO:0005515
Ssu1g3742 517 SMART Lish 5 37 IPR006594 GO:0005515
Ssu1g3742 517 ProSiteProfiles LIS1 homology (LisH) motif profile. 5 37 IPR006594 GO:0005515
Ssu1g3742 517 MobiDBLite consensus disorder prediction 106 195 - -
Ssu1g3742 517 ProSiteProfiles Trp-Asp (WD) repeats profile. 303 339 IPR001680 GO:0005515
Ssu1g3742 517 SUPERFAMILY WD40 repeat-like 198 491 IPR036322 GO:0005515
Ssu1g3742 517 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 203 236 - -
Ssu1g3742 517 PANTHER WD40 REPEAT PROTEIN 4 492 IPR045183 GO:0003714|GO:0016575
Ssu1g3742 517 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 262 294 - -
Ssu1g3742 517 Gene3D - 2 67 - -
Ssu1g3742 517 Pfam LisH 8 33 IPR006594 GO:0005515
Ssu1g3742 517 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 386 420 - -
Ssu1g3742 517 CDD WD40 200 491 - -
Ssu1g3742 517 ProSiteProfiles Trp-Asp (WD) repeats profile. 262 294 IPR001680 GO:0005515
Ssu1g3742 517 ProSiteProfiles Trp-Asp (WD) repeats profile. 386 427 IPR001680 GO:0005515
Ssu1g3742 517 Coils Coil 121 141 - -
Ssu1g3742 517 SMART WD40_4 196 235 IPR001680 GO:0005515
Ssu1g3742 517 SMART WD40_4 251 294 IPR001680 GO:0005515
Ssu1g3742 517 SMART WD40_4 421 469 IPR001680 GO:0005515
Ssu1g3742 517 SMART WD40_4 379 418 IPR001680 GO:0005515
Ssu1g3742 517 SMART WD40_4 296 335 IPR001680 GO:0005515
Ssu1g3742 517 SMART WD40_4 338 376 IPR001680 GO:0005515
Ssu1g3742 517 PRINTS G protein beta WD-40 repeat signature 222 236 IPR020472 -
Ssu1g3742 517 PRINTS G protein beta WD-40 repeat signature 456 470 IPR020472 -
Ssu1g3742 517 PRINTS G protein beta WD-40 repeat signature 322 336 IPR020472 -
Ssu1g3742 517 ProSiteProfiles Trp-Asp (WD) repeats profile. 428 478 IPR001680 GO:0005515
Ssu1g3742 517 PANTHER F-BOX-LIKE/WD REPEAT-CONTAINING PROTEIN TBL1XR1 ISOFORM X1 4 492 - -
Ssu1g3742 517 MobiDBLite consensus disorder prediction 106 171 - -
Ssu1g3742 517 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 303 339 - -
Ssu1g3742 517 ProSiteProfiles Trp-Asp (WD) repeats profile. 203 244 IPR001680 GO:0005515
Ssu1g3742 517 ProSitePatterns Trp-Asp (WD) repeats signature. 322 336 IPR019775 -
Ssu1g3742 517 Pfam WD domain, G-beta repeat 424 469 IPR001680 GO:0005515
Ssu1g3742 517 Pfam WD domain, G-beta repeat 299 335 IPR001680 GO:0005515
Ssu1g3742 517 Pfam WD domain, G-beta repeat 381 418 IPR001680 GO:0005515
Ssu1g3742 517 Pfam WD domain, G-beta repeat 266 294 IPR001680 GO:0005515
Ssu1g3742 517 Pfam WD domain, G-beta repeat 200 235 IPR001680 GO:0005515
Ssu1g3742 517 ProSitePatterns Trp-Asp (WD) repeats signature. 456 470 IPR019775 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu1g3742 Ssu-Chr1 93867515 93873482 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu1g3742 306 503 Miscellaneous Gene Families AT5G08390 24.876 1.10e-12 68.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu1g3742 K04508 - gmx:100783690 897.886
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu1g3742 1 93867515 93873482 Ssu1g3742 1 93867515 93873482 ECH