Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu1g3731 ATGTCGCAACGATCATCATCATCTGCGTTTGACGACGATGAGTCTCGTGGCTTGTCGTCTCAACAACCCTCGCGCGTGTCTCGGTCTCATCAAACCCTAGAAGACGCTTTTTCTCGTCTCTCTGTCTCTGCAGCTCCCTTCAACCATCCACCTTCTGATTTCGCCGCCGATGGTCCATCTGGCATCAGCTATCCCTCGAATATCCTCTCTTGCAATGGTTGGGGTCATGGGGCTTTCACCCCTCGAATTTCCAATCTTTGGTACCCCACATTCACTTCCAGCGGTTACTCTTACGATGACGGCTTTCTCCATTCCGAGCCTTTGGTGAGGCAAAGGGAAAACCCCTCATTCGGCGGCGCTTTTCCCGTTGCGCCACTCTCCAATGGGATGCAACAAAGAACCCCTGATGGTGATTTCTTCAACGGTTTTAACGGGGGGTTTAGTGTCGATGAAAGGCGCATCCGTTGGTTCAATGATTTGAAGGGTAGGGTTCTGTTGTTGGCTAAGGATCAGCACCAGTGTAGGACTTTGCAGGAGACTATGAAAATGTTGACGGGCGAGGAGTTTTGTGTCATCTTCTTGGAGCTGATAAATCACGTGACTCAGTTGATGGTTGATCCCTTTGGGAATTACGTTGTTCAGAGGATGGTGGAAATTTGCAGTGAAGAGCAGCTCACTCAGATCGTTTTAATGGTCGCTCGGTGTAGTTTTCAGTTAACCAGAATTTGTCTAAGTCCGCATGGAACCCGGGCTGTTGAGAAACTATTGGAGCATGTTACCACCCGGGAGCAACGAGTTCGTGTTATGTCAGCTCTTAGTCCCGGTGCTGCTATATTGGCCAAGGATGTGAATGGTCATCGTGTGCTTCTGCATTGTCTAAAATATTTCTctggagaagaaaataagCATCTTCTCAATGTGGTGGCAAACAAGTGCTATGGGATCGCAAAAGATAAGACTGGGTGTTGTGTGCTGCAGCAATGTGTTAACCATGCACAgggagaaacaaaaacaaagctGATTACTGCTATCCTAGTGTATGCTTCACCCCTGGCCGAAGACTGTTACGGCAACTATGTTGTGCAACATTTATTGTCTCTGAAAGTACCAGGAGTTGCAGAAAGACTAATGAGACAGCTTGAAGGAAATTTTTTCTATCTTGCCTGCAACAAATATGGTAGTAATGTAGTGGAGAAGTTCTTTCAAGACTCGGGGGAACAGCtttcaacattaattattttggagTTGCTCCACAATCCAAATGTTGCAATGCTTCTTGTGGATCCATATGGAAATTATGTTATCAAATCAGCACTGTCAGCATCCAAGGGTCTTGCTCGGAATGCCTTGGAGCAACTGATCGAGCTAAATTCCCTGATGATGCAGAGCAACCTCTATGGCAAAAAGTTACTTTCTTGGTTTGACAAGGGGAAAATATAA 1440 0.4479 MSQRSSSSAFDDDESRGLSSQQPSRVSRSHQTLEDAFSRLSVSAAPFNHPPSDFAADGPSGISYPSNILSCNGWGHGAFTPRISNLWYPTFTSSGYSYDDGFLHSEPLVRQRENPSFGGAFPVAPLSNGMQQRTPDGDFFNGFNGGFSVDERRIRWFNDLKGRVLLLAKDQHQCRTLQETMKMLTGEEFCVIFLELINHVTQLMVDPFGNYVVQRMVEICSEEQLTQIVLMVARCSFQLTRICLSPHGTRAVEKLLEHVTTREQRVRVMSALSPGAAILAKDVNGHRVLLHCLKYFSGEENKHLLNVVANKCYGIAKDKTGCCVLQQCVNHAQGETKTKLITAILVYASPLAEDCYGNYVVQHLLSLKVPGVAERLMRQLEGNFFYLACNKYGSNVVEKFFQDSGEQLSTLIILELLHNPNVAMLLVDPYGNYVIKSALSASKGLARNALEQLIELNSLMMQSNLYGKKLLSWFDKGKI 479
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu1g3731 479 ProSiteProfiles Pumilio RNA-binding repeat profile. 306 342 IPR001313 GO:0003723
Ssu1g3731 479 ProSiteProfiles Pumilio RNA-binding repeat profile. 416 455 IPR001313 GO:0003723
Ssu1g3731 479 Gene3D - 148 478 IPR011989 -
Ssu1g3731 479 ProSiteProfiles Pumilio RNA-binding repeat profile. 195 230 IPR001313 GO:0003723
Ssu1g3731 479 SMART pum_5 195 230 IPR001313 GO:0003723
Ssu1g3731 479 SMART pum_5 307 342 IPR001313 GO:0003723
Ssu1g3731 479 SMART pum_5 417 452 IPR001313 GO:0003723
Ssu1g3731 479 SMART pum_5 271 306 IPR001313 GO:0003723
Ssu1g3731 479 SMART pum_5 234 270 IPR001313 GO:0003723
Ssu1g3731 479 SMART pum_5 343 378 IPR001313 GO:0003723
Ssu1g3731 479 SMART pum_5 159 194 IPR001313 GO:0003723
Ssu1g3731 479 SMART pum_5 379 414 IPR001313 GO:0003723
Ssu1g3731 479 PANTHER PUMILIO HOMOLOG 15 144 472 - -
Ssu1g3731 479 SUPERFAMILY ARM repeat 156 474 IPR016024 -
Ssu1g3731 479 ProSiteProfiles Pumilio RNA-binding repeat profile. 343 378 IPR001313 GO:0003723
Ssu1g3731 479 Pfam Pumilio-family RNA binding repeat 311 345 IPR001313 GO:0003723
Ssu1g3731 479 Pfam Pumilio-family RNA binding repeat 163 197 IPR001313 GO:0003723
Ssu1g3731 479 Pfam Pumilio-family RNA binding repeat 351 365 IPR001313 GO:0003723
Ssu1g3731 479 Pfam Pumilio-family RNA binding repeat 241 272 IPR001313 GO:0003723
Ssu1g3731 479 Pfam Pumilio-family RNA binding repeat 199 229 IPR001313 GO:0003723
Ssu1g3731 479 Pfam Pumilio-family RNA binding repeat 421 436 IPR001313 GO:0003723
Ssu1g3731 479 Pfam Pumilio-family RNA binding repeat 383 417 IPR001313 GO:0003723
Ssu1g3731 479 Pfam Pumilio-family RNA binding repeat 279 308 IPR001313 GO:0003723
Ssu1g3731 479 MobiDBLite consensus disorder prediction 1 32 - -
Ssu1g3731 479 CDD Pumilio 158 472 IPR033712 GO:0003723
Ssu1g3731 479 PANTHER RNA BINDING PROTEIN PUMILIO-RELATED 144 472 - -
Ssu1g3731 479 ProSiteProfiles Pumilio RNA-binding repeat profile. 379 415 IPR001313 GO:0003723
Ssu1g3731 479 ProSiteProfiles Pumilio homology domain (PUM-HD) profile. 135 478 IPR033133 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu1g3731 Ssu-Chr1 93679790 93682504 Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu1g3731 - - gmx:100795545 708.753
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu1g3731 1 93679790 93682504 Ssu1g3731 1 93679790 93682504 ECH