Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu1g3729 ATGAAGTcccaaatgaagaaaaaaagagagacccCCGTTCCCAACACTCCTTGCAACACCAGCGATCACGTGACGGAAGGGTCCAGGGAAAATCAGGTTTGCACTAGCCCGTGTTGTTTCTTCTGCAGCATGAGAGAACCAGATGCATCTCTCAGAAGGGCTGGAATAGCGACCTGCTTCAAAGAAATGACTCGGGGAGAGAATCAAGAGCACGTGTTGGTGCTGAGTGGACTATGGCACATCGCAATGAGCCAACCGAACGAGCCAGAGTTCCCATCCCTCGGCGTATTCAAGTGCATGGCAAGTCTAATCCACAAAGGTGTAAACGACAGACACTGGCTtctcacaaatcaaaacataTACATACCCTACTATGCTGCTCATATCATTGGCTCATACACCATGAACAAGGAGGAGTTTGCACAACTAGCTGTACAATCAGGTGTGATGCCCCCATTACTGGACCTGCTTAGGGGCAAGATAAGTTGGGTTGAGCAAAGAGTTGCGGTTAGAGCACTTGGTCACTTGGCCAGTTACAAAAGCACGTTTGAATCAGTGGCACAGCACGAACAAGAGGTGGTGGAGCTGGCCTTGAACTTGGCTTCCACTTGTTTACAAGTTGTCTATGTTGACTTCGTAGCTGAGAAGGATGTGAACAAAAGAGTAGGGTACCACAGGAACTTGCTCACTAGAGGGGTTGGGGATTTGGAGACGGAGAATCGCAAGGCAGAGGAATGGGCTAGTCAGTTTCAGTGTTGGTCTCTTTACCTTCTGAATTGCTTTGCTTGCAAAGATAGGTCTCTGGATCTCATCTGCAAAAGGGTGTTTCTGAAGGACTTGTGCGATATGTGGGGTGGGTTGATAAATCACACGTCACCAGCAGGGGTTGGACTGATTAGAATCTTGTGCTATAGTAAAGTAGGAAGGAAAAGCATTGCTGAGTTACCAAAAGTTGTAAAAACTCTAGGTaacctttcaagatcttcagaTGATTGGCAGTATATAGGTATCGATTGTCTTCTTCTGCTTCTCAAGGACCCAGATACGAGGTACAAAGTTCTTGATGTTGCCGCTTCATACCTCGTTGATTTGATTGAACTTAGAAGCCTTGGAGATAAATCAAACGTGGGTGAGACTATCACAAAGGTGCTCCTTCTGGATAGTAATAAATTGAAACCCGACAGACAAAAGGTTGGGGCAACGTTATTACAAGAGGTGGTGGATTTGAAGGTGGATAGGAGGAACAAGGAGAAGCTAGTTTCCGAGGAAAAATTAGAGGAAACAAGGGTTTTGGTGAGCCTGATAAAGCAACAAGCGAATCACATGTTCAGGTTGGGAAAGGTGGAAGAGGCATTGTTGAAATATTCTGAAGCACTTGGTGTTTGCCCCTTGAGGtttagaaaagagagaatggtGATCTACAGTAACAAAGCGCAGTGTCATATTCTGCTTAAAAACGCAGATTCAGCGATCAGTGACTCAACGCGCGCTCTTTGCCTGTCCAACCCAGCAAACACGCATGGGAAAAGCCTTTGGAGGAGGTCACAGGCATATGACATGAAAGGAATGGCCAAAGAGAGCCTCATGGACTGCATAGTGTTCATGAACAGTTGCATCAAGTCCGGTGAGACCATGCGCGTCAAGATTCCATACCACGCCGCGCGCATGATCTGCAAACACATGGATGCCACGTGGCTCTTTGCCACTGCTCGCTCAACGGTGGAAAAAACTCAACAATTGAACCAAGTCGGCGGGGATGATCAGAACGGGGGCAATCATGAAGAGCAGCCACGTGATCATGAGGCGTTGATGACGATGATGGAAAAGAGAAACAGTCTCATACACGGTCTGTCAACCATTATTGAAGAACCTTTTCACGCAAAAGAAGCTGGTAGGAGAAAGATGGAAAGGGCGAGAAGGAGATTCAAGAAAGCTGTTGTGGCTCGACCAACGTAA 1956 0.4514 MKSQMKKKRETPVPNTPCNTSDHVTEGSRENQVCTSPCCFFCSMREPDASLRRAGIATCFKEMTRGENQEHVLVLSGLWHIAMSQPNEPEFPSLGVFKCMASLIHKGVNDRHWLLTNQNIYIPYYAAHIIGSYTMNKEEFAQLAVQSGVMPPLLDLLRGKISWVEQRVAVRALGHLASYKSTFESVAQHEQEVVELALNLASTCLQVVYVDFVAEKDVNKRVGYHRNLLTRGVGDLETENRKAEEWASQFQCWSLYLLNCFACKDRSLDLICKRVFLKDLCDMWGGLINHTSPAGVGLIRILCYSKVGRKSIAELPKVVKTLGNLSRSSDDWQYIGIDCLLLLLKDPDTRYKVLDVAASYLVDLIELRSLGDKSNVGETITKVLLLDSNKLKPDRQKVGATLLQEVVDLKVDRRNKEKLVSEEKLEETRVLVSLIKQQANHMFRLGKVEEALLKYSEALGVCPLRFRKERMVIYSNKAQCHILLKNADSAISDSTRALCLSNPANTHGKSLWRRSQAYDMKGMAKESLMDCIVFMNSCIKSGETMRVKIPYHAARMICKHMDATWLFATARSTVEKTQQLNQVGGDDQNGGNHEEQPRDHEALMTMMEKRNSLIHGLSTIIEEPFHAKEAGRRKMERARRRFKKAVVARPT 651
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu1g3729 651 PANTHER ARM-REPEAT/TETRATRICOPEPTIDE REPEAT (TPR)-LIKE PROTEIN 3 640 - -
Ssu1g3729 651 Gene3D Tetratricopeptide repeat domain 431 548 IPR011990 GO:0005515
Ssu1g3729 651 SUPERFAMILY ARM repeat 114 359 IPR016024 -
Ssu1g3729 651 MobiDBLite consensus disorder prediction 1 26 - -
Ssu1g3729 651 PANTHER ARM-REPEAT/TETRATRICOPEPTIDE REPEAT (TPR)-LIKE PROTEIN 3 640 - -
Ssu1g3729 651 Gene3D - 112 421 IPR011989 -
Ssu1g3729 651 SUPERFAMILY TPR-like 433 531 IPR011990 GO:0005515
Ssu1g3729 651 SMART arm_5 137 178 IPR000225 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu1g3729 Ssu-Chr1 93640296 93642658 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu1g3729 - - gmx:100777591 1075.08
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu1g3729 1 93640296 93642658 Ssu1g3729 1 93640296 93642658 ECH