Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu1g3722 ATGACAAAACTTGATCAGAAAAATTCTTTCAATGATCCCAAGAGAATGCCTGGTGGATCTGTGTCCCCTGTGATAAACAATACAGCGTCACAACAAGCTTCAAATTCTTGGCAACTGTCAgcaaacaaagaacaaaatttgGGCTCATTTTCATCTGTTTCATATGTCAAAAAGGAGCCTAATGACCTGTCTACTGAGCAGCAACATAGGCATAATTTGTCTAAATTTCATGGGCTGCATTCTGTTAATTCTGTGCAAATTGAACAGGGTAGTAGTGCCAATCAAGGCACCCTAAAGGAGGAGTTTTCAAGAGGCCTTCCAGCATCCACAAGTATGCCGCATACAACATCTTCTAGCTTGCTGCCTCTCAATTCTGCTTCCTCTTCTGCATCTCAACTGGACCCTAGTGTCACTTTAAGTTCTCAGATTCCATCAAACACTTCTGGTATAAATGCAAGGATACCTTTGAAAAAGCCTTCTCCAGGCCAGAAGAAACCAATTGAAGCACTTGGTTCTTCACCTACTCCTCCAAGTAAGAAACAAAAAGTGTCTGGGGCATCTCTGGAACAAAGCATTGAACAGCTTAATGATGTTACTGCTATTAGTGGTGTTGATCTTAGGGAGGAGGAAGAACAATTATTTTCTGGGCCCAAGGAGGACAGTCGAGTTTCAGAAGCATCTCGAAGAGTTGTGCAAGAAGAGGAGGAAAGTCTGATTTTGCAGAAAGCTCCATTGCAGagaaaattgattgaaattaTAACTGAGTGTGGCTTGAAGGGCATGAGTAATGATTTGGAGAGATGCTTGTCACTGTGTGTGGAGGAAAGAATGCGTGGAGTAATAAGTAACCTGATTAGAATGTCAAAACAGCGGGTTGATTTGGAGAAGACAAGGCATCGGACTGTTGTCACTTTGGATGTTCGGCAGCAAATCATAACAATGAATAAGAAGGCAAGGGAAGAATGGGAGAAAAAACAGGCAGAAACAGAGAAGCTCCGGAAACTAAATGATGTAGAAGTTAATGCTGGAATTGATGGTGACAAGGAGAAGGATGAGGGTCGCACTAAATCAGCAAAGGTGAACAAAGAAGTGGATGACAAGATGAGGACAAATGCTGCTAATGTTGCTGCCCGAGCTGCTGTTGGGGGAGATGACATGCTGTCAAAGTGGCAACTTATGGCTGAGCAAGCCAGACAGAAACGTGAAGGGGGGATGGATGCTTCATCTGGTTCTCAGCCAGCTAAAGATGTGAGCCGCAAATCTTCATCAACATCAGGAAGGGGTACAAAAGATAATCAGGCAAGGGAGAAAAAAGGTTCAACTTCTCTTGCAACTTCTGGGGCTGCTAGAAAATTTGGGAGAAGTCATGTCACTACACCTCAAACTAGTGTAGCTCGAAGCATCTCTGTCAAGGACGTGATTGCAGTCCTGGAGAGAGAACCCCAGATGTCCAAATCATCACTCATATATCGATTGTATGAGAGAATTCATTCCAACACCTCAACTGAATAA 1512 0.4239 MTKLDQKNSFNDPKRMPGGSVSPVINNTASQQASNSWQLSANKEQNLGSFSSVSYVKKEPNDLSTEQQHRHNLSKFHGLHSVNSVQIEQGSSANQGTLKEEFSRGLPASTSMPHTTSSSLLPLNSASSSASQLDPSVTLSSQIPSNTSGINARIPLKKPSPGQKKPIEALGSSPTPPSKKQKVSGASLEQSIEQLNDVTAISGVDLREEEEQLFSGPKEDSRVSEASRRVVQEEEESLILQKAPLQRKLIEIITECGLKGMSNDLERCLSLCVEERMRGVISNLIRMSKQRVDLEKTRHRTVVTLDVRQQIITMNKKAREEWEKKQAETEKLRKLNDVEVNAGIDGDKEKDEGRTKSAKVNKEVDDKMRTNAANVAARAAVGGDDMLSKWQLMAEQARQKREGGMDASSGSQPAKDVSRKSSSTSGRGTKDNQAREKKGSTSLATSGAARKFGRSHVTTPQTSVARSISVKDVIAVLEREPQMSKSSLIYRLYERIHSNTSTE 503
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu1g3722 503 PANTHER IP01149P-RELATED 27 497 - -
Ssu1g3722 503 Coils Coil 315 335 - -
Ssu1g3722 503 CDD TAF4 190 491 IPR007900 GO:0005669|GO:0006352
Ssu1g3722 503 Pfam Transcription initiation factor TFIID component TAF4 family 195 492 IPR007900 GO:0005669|GO:0006352
Ssu1g3722 503 MobiDBLite consensus disorder prediction 411 429 - -
Ssu1g3722 503 MobiDBLite consensus disorder prediction 1 41 - -
Ssu1g3722 503 MobiDBLite consensus disorder prediction 57 77 - -
Ssu1g3722 503 MobiDBLite consensus disorder prediction 105 187 - -
Ssu1g3722 503 MobiDBLite consensus disorder prediction 21 41 - -
Ssu1g3722 503 Gene3D Histone, subunit A 240 285 IPR009072 GO:0046982
Ssu1g3722 503 PANTHER TRANSCRIPTION INITIATION FACTOR TFIID SUBUNIT 4 27 497 IPR045144 GO:0005669|GO:0006352
Ssu1g3722 503 MobiDBLite consensus disorder prediction 395 470 - -
Ssu1g3722 503 MobiDBLite consensus disorder prediction 108 153 - -
Ssu1g3722 503 MobiDBLite consensus disorder prediction 343 366 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu1g3722 Ssu-Chr1 93552938 93558541 Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu1g3722 K03129 - gmx:100797127 807.749
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu1g3722 1 93552938 93558541 Ssu1g3722 1 93552938 93558541 ECH