Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu1g3715 ATGAAGCTGCTGAGAGCATCATTCTCTTACGCCACTTGGTCGATCGTTTCCGATAAAAATGTCGAATCGATCGGTCAGGGTAGGCAAGACAATAACAACAAGGGTTTCAGCAAGGCCCAGAAGAAATTCGTCCCAAAAAATCCCAATCCAAACCCAACTCCAACCCTCTCAACCTCCCTCAGACAAACACAACCATCCATCACCAGAGCCCACAATGGCAATTTCGTAAAATACTTGCCCCAAGACGAGGCCGTGGCAGCGGGTCTCGGCGCCGAGGACGGAGCATTGGATCCCCTCGAATCTCAGAGAGTCGTAGATCTTTTGAACACACACTTGTCACGCTTGCTCAAGTTGAAACCCAAGGAATTCTGGAGACAAGTGGCTACTGACACTTCCCTACATGAGTTTTTGGACAGCTTCTTGCAGTTCAGGAGCAGGTGGTATGATTTTCCTCATCGCGGGGTGAAAGGGATTGTTGCCGGTGTTATTGTCGGAGAGCTTGATTTGAGTCGCCGCGTTTACATGGTATTGTATCGCATTTCTAACAATAAAGACCCGGGTGCTCGACCTGCTGATGCCCTCAGTTTGAGAGACCATGGAGTTCTTTTGCAGGAGAAGAAGTTGCTTGAATTGCCAAAGTTGTTAGATATATGTGCCATATACTATCATGAAAATGAAGAACTGACAAGGTCACTGGTTAGAAATGCTTTGAATGCTCAGCCTTGGATCCATAATAATCTGACTGCAgtagtatctcattttctaggAATTGTCAGCACAATGCATGAACGTTGCAGTTCATCATTGGAGGTCTTATTTGCTTCTGGAAATCTTGATCACCATAATGCTGCTTTTCTTCAAGCTGATCTGCTGGAGGTGATGGACTTTATAAATGATGCAATTGTATCAATGGATTCTTTTGTTAGTGCATACGAACCAGCAGCTGTGTTCTTCTCTTGCCCAGTTGAAATGAGTTATGGGAATGAGGAACTGCTGAGCCTCCTTGCCAGATTGCATGATTCACTAATTCCATCATTGCAAAAGGGATTCCGTATGATTTTTGCTGACCAACAAGATGGCACAGTATCTAATATCTTAGTAAGTTTAAAGATGTTAAGAATGAGATTGGTAAAGTTTGGTTGGCAACTATTGCACTTGTGCTATCTAAGTGATGAAGTGTTCAGAGATAGCATCCCTCTTCCAGCTGCCACAAAGATGTTTCCTGCCAATTTGGAGGACCCAGTCATCAGAGCAGATATTCTGGTTCAAACATTTAGAGAGATCAATTCAGTATCATTACATTTTCAGGAAATCCATCAGAAAGAAACATTTCTTCAAGATGTTGAAAGAAATTTCAATATACTAAGGAGGATTGAGAGATTGAAGGATAGTGGATGGATATTCGTTGATGATGaacaatttcaatatttatctGGGATGTTGAGTTCTGTGAAAGAGATTTATAAGGAGCCATATTCTACAACCACCCCTGTGCCAAACCAAGCATTACTGACGGATGAAGATGCTGCAATTGCAGAGTCAAACATCAGTCAAATTAGGGATCTGTTCCCTGATTATGGTAAAGGGTTTTTAGCTGCGTGTCTTGAAGTCTATGACCAGAATCCAGAAGAGGTTATTCAAAGAATTTTAGAGGGAACCCTTCATGAAGATCTGCAGAACCTGGACACCTCGCTAGAGACATTGCCACAAGCCAAGAATACCACTGTGGGTGGGAAAGATAAAGGAAAAGGTAAATTAATTGATTCTACACCAGCATCCTCAAATCCAGAAGTTGTTAGGGGGAAGCAACAGACAGAGGGGCCATTGATGTCATCATCCTCTGCTTCACTTGGAAAATTTGTGAGGAAATCTAAAGCTGACTTGCCTGATCTCAGTATTCTGGATAAAAAGGACGAGAAAGATACATCAAAAACTGCTGCCATGCTTTCACAATATGAGTATGAAGATGAGTACGACGACTCTTTTGATGACTTGGGTCTAAGTGTAGCAGACTCTGGAATTGAAGAAAATGAGACACTGGGTGACAAAATAAATGCAAAGTCAGGGAAATCGTGGGCAACGGAGACCGGAAACTCAGTGAAAAATGCCCCTGATTCAAAATGGGGCTCCAGGAAAAAGCCGCAGTACTATGTCAAGGATGGTAAGAATTACAGCTACAAAGTGGCTGGTGCAGTAGCAGTGGCAAATTCCGATGAAGCTTCGCTAGTAACTCAAGTTCAGAAAGAATTAATACACGGCCTTGGACTGCGGCGGCAACCTTCCTCTTGGCGCAGTAAAGAAGTTGACAGATTCCTACAAGGAGGATGA 2328 0.4253 MKLLRASFSYATWSIVSDKNVESIGQGRQDNNNKGFSKAQKKFVPKNPNPNPTPTLSTSLRQTQPSITRAHNGNFVKYLPQDEAVAAGLGAEDGALDPLESQRVVDLLNTHLSRLLKLKPKEFWRQVATDTSLHEFLDSFLQFRSRWYDFPHRGVKGIVAGVIVGELDLSRRVYMVLYRISNNKDPGARPADALSLRDHGVLLQEKKLLELPKLLDICAIYYHENEELTRSLVRNALNAQPWIHNNLTAVVSHFLGIVSTMHERCSSSLEVLFASGNLDHHNAAFLQADLLEVMDFINDAIVSMDSFVSAYEPAAVFFSCPVEMSYGNEELLSLLARLHDSLIPSLQKGFRMIFADQQDGTVSNILVSLKMLRMRLVKFGWQLLHLCYLSDEVFRDSIPLPAATKMFPANLEDPVIRADILVQTFREINSVSLHFQEIHQKETFLQDVERNFNILRRIERLKDSGWIFVDDEQFQYLSGMLSSVKEIYKEPYSTTTPVPNQALLTDEDAAIAESNISQIRDLFPDYGKGFLAACLEVYDQNPEEVIQRILEGTLHEDLQNLDTSLETLPQAKNTTVGGKDKGKGKLIDSTPASSNPEVVRGKQQTEGPLMSSSSASLGKFVRKSKADLPDLSILDKKDEKDTSKTAAMLSQYEYEDEYDDSFDDLGLSVADSGIEENETLGDKINAKSGKSWATETGNSVKNAPDSKWGSRKKPQYYVKDGKNYSYKVAGAVAVANSDEASLVTQVQKELIHGLGLRRQPSSWRSKEVDRFLQGG 775
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu1g3715 775 Gene3D - 512 554 - -
Ssu1g3715 775 PANTHER ACTIVATING SIGNAL COINTEGRATOR 1 COMPLEX SUBUNIT 2 30 756 - -
Ssu1g3715 775 ProSiteProfiles CUE domain profile. 511 554 IPR003892 GO:0043130
Ssu1g3715 775 SMART cue_7 511 553 IPR003892 GO:0043130
Ssu1g3715 775 MobiDBLite consensus disorder prediction 24 38 - -
Ssu1g3715 775 CDD CUE_ASCC2 513 552 IPR041800 -
Ssu1g3715 775 MobiDBLite consensus disorder prediction 588 616 - -
Ssu1g3715 775 SUPERFAMILY UBA-like 512 568 IPR009060 GO:0005515
Ssu1g3715 775 MobiDBLite consensus disorder prediction 24 61 - -
Ssu1g3715 775 PANTHER ACTIVATING SIGNAL COINTEGRATOR 1 COMPLEX SUBUNIT 2 ASC-1 COMPLEX SUBUNIT P100 30 756 - -
Ssu1g3715 775 MobiDBLite consensus disorder prediction 689 705 - -
Ssu1g3715 775 Pfam CUE domain 513 553 IPR003892 GO:0043130
Ssu1g3715 775 MobiDBLite consensus disorder prediction 689 712 - -
Ssu1g3715 775 MobiDBLite consensus disorder prediction 572 616 - -
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu1g3715 K18667 - gmx:100778129 1228.77
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu1g3715 1 93444761 93454504 Ssu1g3715 1 93444761 93454504 ECH